BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887400
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 279 2e-74
> AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:19045212-19047453 FORWARD LENGTH=1707
Length=1707
Score = 279 bits (151), Expect = 2e-74
Identities = 501/663 (76%), Gaps = 51/663 (8%)
Strand=Plus/Plus
Query 52 TTTTTTGATTCAAACAAGGAGTCATGGATACGCAAACTCCGGATAGATATTCCTAATTCT 111
||||||||||| ||| ||| |||||||||||||||||||| ||||| || ||
Sbjct 328 TTTTTTGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGAT-TT--GGGTT-A 383
Query 112 TC-TCATAG-CAAGTCTTTTCCCA-CCCGATGGATTGATGCTGTGAGTACACGTAGGATT 168
|| |||| | |||| | || || | |||||||||||||| || ||| |||||||||
Sbjct 384 TCATCAT-GATAAGTATGATCTCATGTC-ATGGATTGATGCTGCGACTACGCGTAGGATT 441
Query 169 GAACATCTCGATGTTCATTTTGCCTTTTGTCGGCCAGAAGAATCACCATCCCTGAATATA 228
| ||||| |||||||| ||| |||| || | ||| || | | || ||| |||
Sbjct 442 CAGCATCTTGATGTTCA--TTG--TTTTCACGATAATAAG-AT-A-C--CCTTGAGCATA 492
Query 229 TATGTC-TGCCA-GACACTGGTACAGTTACAACTCC-AAGGGGTCGCCTTGGCTAGTGCC 285
||| | || || ||| ||||||| |||| ||||| ||| | | |||| ||| | ||
Sbjct 493 TAT-ACATG-CACGACGTTGGTACACTTACGACTCCGTTGGGCT-GTCTTGACTAATCCC 549
Query 286 GAGTTTGTTACCTTACCAAGCCTTAAGATCATGCATTTAGAATATATTAGCTATCCCAAT 345
||||||||| ||||||| | || |||||||||||||| ||| || ||||||||||||||
Sbjct 550 GAGTTTGTTTCCTTACCTTGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAAT 609
Query 346 GAGTCCACTTTGGAGAAACTTATCTCTGGCTCTCCAGTTTTGGAAGAGTTAACTATTCGC 405
||| |||| ||| ||||||||||||| |||||||||||| | ||||| |||| || ||
Sbjct 610 GAGACCACGTTGCAGAAACTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAA-TACTC-T 667
Query 406 ACATGtttttttttttATAAGGAAAAGGTTTTACAAGTGCGCTCTCATACGCTAAAGAGA 465
|| | | | | | ||||| ||| ||||||||| |||||||| |||||||||||||
Sbjct 668 TCA-GCACTATGTATCCTAAGGGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAG- 725
Query 466 ATTC-ACATAAATGAGTCCAGTACCCAATTTGTGATTGATGCACCTCTACTCCAGTGTTT 524
| || | || ||||||| || | |||||||| |||||||||||||||||||| |
Sbjct 726 ACTCGATATCAATGAGT---TTATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCT 782
Query 525 GAAGGCTGAGGT-TATCTTTACAAAGAAATTTCAGATCATCAACTCGGCTTTTCCTGGCA 583
|| |||| || | || || |||||||| ||||||||||||| |||| ||| |||| ||
Sbjct 783 GAGGGCTAAGATGTA-CTCAACAAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCA 841
Query 584 GACTAGATATTGATATCAACTCTACTAGT--GA-A-AGC-----------TTGATTTG-C 627
||||||||||||| || | |||| || || | | | ||| |||
Sbjct 842 AACTAGATATTGATTTCGTCAATACTGGTGGGAGATACCAAAAAAAAAAAGTGA-TTGAA 900
Query 628 GATATCCTCACCGATATTTCGAGGGTCAGGGATCTAGTTATTAATAGGCGTACTTGGAAG 687
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 901 GATATCCTCATCGATATTTCGAGGGTCAGGGATCTAGTTATTAGTAGTAATACTTGGAAG 960
Query 688 GAA 690
|||
Sbjct 961 GAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5