BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887400 Length=822 Score E Sequences producing significant alignments: (Bits) Value AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 279 2e-74 > AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr1:19045212-19047453 FORWARD LENGTH=1707 Length=1707 Score = 279 bits (151), Expect = 2e-74 Identities = 501/663 (76%), Gaps = 51/663 (8%) Strand=Plus/Plus Query 52 TTTTTTGATTCAAACAAGGAGTCATGGATACGCAAACTCCGGATAGATATTCCTAATTCT 111 ||||||||||| ||| ||| |||||||||||||||||||| ||||| || || Sbjct 328 TTTTTTGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGAT-TT--GGGTT-A 383 Query 112 TC-TCATAG-CAAGTCTTTTCCCA-CCCGATGGATTGATGCTGTGAGTACACGTAGGATT 168 || |||| | |||| | || || | |||||||||||||| || ||| ||||||||| Sbjct 384 TCATCAT-GATAAGTATGATCTCATGTC-ATGGATTGATGCTGCGACTACGCGTAGGATT 441 Query 169 GAACATCTCGATGTTCATTTTGCCTTTTGTCGGCCAGAAGAATCACCATCCCTGAATATA 228 | ||||| |||||||| ||| |||| || | ||| || | | || ||| ||| Sbjct 442 CAGCATCTTGATGTTCA--TTG--TTTTCACGATAATAAG-AT-A-C--CCTTGAGCATA 492 Query 229 TATGTC-TGCCA-GACACTGGTACAGTTACAACTCC-AAGGGGTCGCCTTGGCTAGTGCC 285 ||| | || || ||| ||||||| |||| ||||| ||| | | |||| ||| | || Sbjct 493 TAT-ACATG-CACGACGTTGGTACACTTACGACTCCGTTGGGCT-GTCTTGACTAATCCC 549 Query 286 GAGTTTGTTACCTTACCAAGCCTTAAGATCATGCATTTAGAATATATTAGCTATCCCAAT 345 ||||||||| ||||||| | || |||||||||||||| ||| || |||||||||||||| Sbjct 550 GAGTTTGTTTCCTTACCTTGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAAT 609 Query 346 GAGTCCACTTTGGAGAAACTTATCTCTGGCTCTCCAGTTTTGGAAGAGTTAACTATTCGC 405 ||| |||| ||| ||||||||||||| |||||||||||| | ||||| |||| || || Sbjct 610 GAGACCACGTTGCAGAAACTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAA-TACTC-T 667 Query 406 ACATGtttttttttttATAAGGAAAAGGTTTTACAAGTGCGCTCTCATACGCTAAAGAGA 465 || | | | | | ||||| ||| ||||||||| |||||||| ||||||||||||| Sbjct 668 TCA-GCACTATGTATCCTAAGGGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAG- 725 Query 466 ATTC-ACATAAATGAGTCCAGTACCCAATTTGTGATTGATGCACCTCTACTCCAGTGTTT 524 | || | || ||||||| || | |||||||| |||||||||||||||||||| | Sbjct 726 ACTCGATATCAATGAGT---TTATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCT 782 Query 525 GAAGGCTGAGGT-TATCTTTACAAAGAAATTTCAGATCATCAACTCGGCTTTTCCTGGCA 583 || |||| || | || || |||||||| ||||||||||||| |||| ||| |||| || Sbjct 783 GAGGGCTAAGATGTA-CTCAACAAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCA 841 Query 584 GACTAGATATTGATATCAACTCTACTAGT--GA-A-AGC-----------TTGATTTG-C 627 ||||||||||||| || | |||| || || | | | ||| ||| Sbjct 842 AACTAGATATTGATTTCGTCAATACTGGTGGGAGATACCAAAAAAAAAAAGTGA-TTGAA 900 Query 628 GATATCCTCACCGATATTTCGAGGGTCAGGGATCTAGTTATTAATAGGCGTACTTGGAAG 687 |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 901 GATATCCTCATCGATATTTCGAGGGTCAGGGATCTAGTTATTAGTAGTAATACTTGGAAG 960 Query 688 GAA 690 ||| Sbjct 961 GAA 963 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40036615159 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5