BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887404

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   499    9e-141


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  499 bits (270),  Expect = 9e-141
 Identities = 311/330 (94%), Gaps = 5/330 (2%)
 Strand=Plus/Plus

Query  164  TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGC  223
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  364  TGGATGAATATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGC  423

Query  224  CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCA---  280
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   
Sbjct  424  CTTGTGCACGTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTG  483

Query  281  TCgaagaagaagaag-aagatgaagtagaagaaatggaagaagtagaagaggttgaagaa  339
            | ||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||
Sbjct  484  TTGAAGAAGAAGAAGTAGGA-GAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAA  542

Query  340  gaagttgaagaagtaggagatgtagaagaagaacaagaagaGGTCATTGATTCAGCTTCT  399
            ||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  543  GAAGTAGATGAAGTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCT  602

Query  400  GCAGAGATACCCAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGAT  459
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  GCAGAGATACCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGAT  662

Query  460  GTTGGCAAGAAACCAGATATGCCCATTTAG  489
            |||||| ||||||||||| | |||||||||
Sbjct  663  GTTGGCGAGAAACCAGATTTTCCCATTTAG  692



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5