BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887412

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   477    3e-134


> AT5G50090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G62900.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants 
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:20369851-20371094 FORWARD LENGTH=806
Length=806

 Score =  477 bits (258),  Expect = 3e-134
 Identities = 319/348 (92%), Gaps = 6/348 (2%)
 Strand=Plus/Plus

Query  7    ATCTCCATCACTGCTCTCTCGGCCA-CCTCTTCCAGTCATGGAGGCCCTCTTAGGCTCAC  65
            ||||| | ||| |||||||| | || | |||||| |||||||||| ||||||||||||||
Sbjct  246  ATCTCTACCACCGCTCTCTC-GTCAGCATCTTCCGGTCATGGAGGGCCTCTTAGGCTCAC  304

Query  66   AAGGATCAAGCTCCTTCGTCCAACGGATACGCTTGTTCTCGGCCACGTCTATAGACTCAT  125
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  305  GAGGATCAAGCTCCTTCGTCCCACGGATACGCTTGTTCTCGGCCACGTCTATAGACTCAT  364

Query  126  TAGCACTAAAGAGGTTATGAAGGGTTTAATGGCGAAAAAATGTTCGAAGTTGAAGAAAGA  185
            || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  365  TACCACCAAAGAGGTTATGAAGGGTTTAATGGCCAAAAAATGTTCGAAGTTGAAGAAAGA  424

Query  186  AAGTAAAGGGTCGGAAGATAAGCTAGAGATGGTGAAAGCAACTAA-CTCTATTAAGCTTG  244
            ||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct  425  AAGTAAAGGCTCGGATGATAAGCTAGAGATGGTGAAAGCAA-TAAACTCTACTAAGCTTG  483

Query  245  ACAAT-ACAGATCAGCTGCAAATGAAGAAGCAAGAGAAAGAAAGGTCAAGAATCTCAAGA  303
            ||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  484  ACAATGA-AGATCAGCTGCAAATGAAGAAACAGGAGAAAGAAAGGTCAAGAATCTCAAGA  542

Query  304  TCATGGCAGCCCTCTTTACAAAGCATTTCAGAAGGAGGGTCTAGCTGA  351
            ||||||||||| || ||||||||||| || |||||||| || ||||||
Sbjct  543  TCATGGCAGCCATCATTACAAAGCATATCGGAAGGAGGATCAAGCTGA  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5