BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887421
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46750.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 1014 0.0
AT2G46740.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 869 0.0
AT2G46760.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 791 0.0
AT1G32300.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 209 3e-53
> AT2G46750.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr2:19208320-19210958 REVERSE LENGTH=1948
Length=1948
Score = 1014 bits (549), Expect = 0.0
Identities = 626/664 (94%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 25 CGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCTCAACACCA 84
||||| ||| |||||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct 77 CGCACGCTAGTCGGGTTATATTATATATTTACACTTATGCACACGGCTGTCTCAACACCA 136
Query 85 CCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTAACTCATAC 144
|| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 137 CCCGATGATCCTGTCAAATGTGTGTCAGGAAACACGAACTGTACAGTCACTAACTCATAC 196
Query 145 GGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCAAAAAAC-GA 203
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 197 GGAGCCTTCCCAGACAGGTCCACATGTCGAGCCGCCAACGTGGCATACCC-AAAAACTGA 255
Query 204 AGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AGCCGAGCTTGTCTCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 315
Query 264 TACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGACGGTTTGTT 323
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 316 AACTCGATATTCCCATAGCATTACTAAGCTCGTGTGTACCGACGGAACCGAAGGTTTGTT 375
Query 324 CATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGCAACGGCCATGACCTTGAC 383
|||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||| ||||
Sbjct 376 CATAAGCACAAAGTTTCTAAACCATACGGTACAAGCCGATGCAACAGCCATGACCATGAC 435
Query 384 GGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAATTGGATTAGC 443
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 436 GGTTGAGAGTGGCATGACGCTTAGGCAGTTAATCGTTGAAGCGGCTAAAGTTGGATTGGC 495
Query 444 GTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGGGAACCGGTGC 503
||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 496 GTTACCTTATGCACCGTATTGGTGGGGGCTGACCGTTGGTGGTATGATGGGAACCGGTGC 555
Query 504 TCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 563
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 615
Query 564 GATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTTTAAGCGAGAT 623
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 616 GATGGTTAGTCCTGGTTCGGTCAACGAAGGGTTTGCAAAGATTAGAATTTTAAGCGAGAC 675
Query 624 TACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTGGCGTTATCTC 683
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 676 TACGACTCCTAACGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTCCTTGGCGTTATCTC 735
Query 684 TCAG 687
||||
Sbjct 736 TCAG 739
Score = 315 bits (170), Expect = 6e-85
Identities = 197/210 (94%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 686 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 745
||||||| || ||||||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct 768 AGAGATCGCTGACATATACTATGAGAAACGATTCGGATTTTGAAGATCAAGCCGTTACTT 827
Query 746 TTGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGT 805
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 828 TTGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGAAAAGTGGTGT 887
Query 806 ATCGAAGAGATGAC-GAGTACCCGTCAACACATCGGGCAATGGTTTGTTCGATTTTTTGC 864
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 888 ATCGAAGAGATGACCGAGTAGCGGTCAACACATCGGGCAATGGTTTGTTCGATTTCTTGC 947
Query 865 CCTTCCGTTCACAACTCTCTGCGGCGATAG 894
| ||||||||||||||||||||||| ||||
Sbjct 948 CATTCCGTTCACAACTCTCTGCGGCAATAG 977
> AT2G46740.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr2:19205157-19207455 REVERSE LENGTH=1798
Length=1798
Score = 869 bits (470), Expect = 0.0
Identities = 607/674 (90%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 17 CGTTTTGGCGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCT 76
|||||||||||||||| |||||||||||| | ||||||| ||||| ||||||| | |||
Sbjct 32 CGTTTTGGCGCACCCTTCTCGGGTTATATTGTTTATTTACACTTGTGCACACGGTAATCT 91
Query 77 CAACACCACCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTA 136
|||||||||| || |||||||| ||||||||||| ||||||| |||||||| |||||| |
Sbjct 92 CAACACCACCCGAAGATCCTGTTAAATGTGTGTCAGGAAACACGAACTGTATAGTCACCA 151
Query 137 ACTCA-TACGGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCA 195
||||| || ||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 152 ACTCATTA-GGAGCCTTCCCAGACCGCTCCACGTGTAGAGCCGCCAACGTGGCTTACCC- 209
Query 196 AAAAAC-GAAGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAAT 254
|| ||| |||||||||||||||||| |||| |||||||| ||| ||||||||||||||||
Sbjct 210 AACAACTGAAGCCGAGCTTGTATCTATCGTCGCTGCAGCTACTAAAGCCGGACGGAAAAT 269
Query 255 GCGTGTAACTACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGA 314
||||||||| |||||||||||||||||||| ||||||| ||| || || |||| |||
Sbjct 270 GCGTGTAACCACTCGATATTCCCATAGCATCCCTAAGCTCACGTGCACTGATGGAAACGA 329
Query 315 CGGTTTGTTCATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGC-AACGGCCA 373
||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 330 CGGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCAAGCCGATGCGAA-GGCCA 388
Query 374 TGACCTTGACGGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAA 433
|||| ||||| |||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 389 TGACTTTGACAGTTGAGAGTGGCGTGACGCTTAGGCAATTAATCGCTGAAGCAGCTAAAG 448
Query 434 TTGGATTAGCGTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGG 493
||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 449 TTGGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGATGG 508
Query 494 GAACCGGTGCTCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGA 553
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 509 GGACCGGTGCTCACGGTAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGA 568
Query 554 CCGAGATCAGGATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTT 613
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 569 CCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGACGGGTTTGCAAAGATTAGAGTTT 628
Query 614 TAAGCGAGATTACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTG 673
||||||||| ||| ||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 629 TAAGCGAGACTACGACTCCTAACGAGTTTAACGCAGCTAAGGTTTCTCTTGGCGTTCTTG 688
Query 674 GCGTTATCTCTCAG 687
||||||||||||||
Sbjct 689 GCGTTATCTCTCAG 702
> AT2G46760.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr2:19213028-19215166 REVERSE LENGTH=1812
Length=1812
Score = 791 bits (428), Expect = 0.0
Identities = 554/616 (90%), Gaps = 4/616 (1%)
Strand=Plus/Plus
Query 74 TCTCAACACCACCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCA 133
||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 101 TCTCAACACCACCCGAAGATCCTGTCAAATGTGTGTCGGGAAACACGAACTGTACAGTTA 160
Query 134 CTAACTCATACGGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACC 193
| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || |
Sbjct 161 CAAACTCATATGGAGCCTTCCCAGACCGTTCCACGTGTCGAGCCGCCAATGTGGCTTATC 220
Query 194 CAAAAAACGAAGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAA 253
||| || ||||||||||||| | ||||||||||||||||||||| ||||||| |||||||
Sbjct 221 CAACAACCGAAGCCGAGCTTATCTCTGTCGTGGCTGCAGCCACTAAAGCCGGGCGGAAAA 280
Query 254 TGCGTGTAACTACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCG 313
|||||||||| || ||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct 281 TGCGTGTAACCACCCGATATTCCCATAGCATCACTAAGCTTGCGTGTACCGACGGGACCG 340
Query 314 ACGGTTTG-TTCATAAGCACAAAGTTTCTAAACCACACGGTGC-AAGCCAATGCAACGGC 371
|||||||| || ||||| ||||||||||||||||||||||||| || || ||||||||||
Sbjct 341 ACGGTTTGCTT-ATAAGTACAAAGTTTCTAAACCACACGGTGCGAA-CCGATGCAACGGC 398
Query 372 CATGACCTTGACGGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAA 431
||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||
Sbjct 399 CATGACCTTGACGGTTGAGAGCGGTGTGACACTTAGGCAGCTAATCGCTGAAGCGGCTAA 458
Query 432 AATTGGATTAGCGTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGAT 491
| ||||||| ||||||||||||||||| ||||||||||| || |||||||||||| ||||
Sbjct 459 AGTTGGATTGGCGTTGCCTTATGCACCATATTGGTGGGGTCTAACCGTGGGTGGTATGAT 518
Query 492 GGGAACCGGTGCTCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGT 551
||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 519 GGGGACCGGTGCTCACGGGAGCTCATTATGGGGTAAAGGAAGTGCGGTCCATGATTACGT 578
Query 552 GACCGAGATCAGGATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGT 611
||||||||||||||| |||||||||||||||| ||| ||||| ||||| ||| |||||||
Sbjct 579 GACCGAGATCAGGATTGTTAGTCCTGGTTCGGTCAATGACGGCTTTGCCAAGGTTAGAGT 638
Query 612 TTTAAGCGAGATTACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCT 671
|||||| |||| |||||| ||||| || ||||| || ||||| ||||||||||| || ||
Sbjct 639 TTTAAGAGAGACTACAACGCCTAAAGAATTTAACGCCGCTAAGGTTTCTCTTGGCGTTCT 698
Query 672 TGGCGTTATCTCTCAG 687
||| ||||||||||||
Sbjct 699 TGGGGTTATCTCTCAG 714
Score = 207 bits (112), Expect = 1e-52
Identities = 160/183 (87%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 706 ATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTTTTGGAAAGAAACACGAGTTT 765
|||| ||||||||||||||| | ||||||||||| || ||||| | |||||| ||||||
Sbjct 763 ATGAGAAATGATTCGGATTTTGGGGATCAAGCCGTAACATTTGGGATGAAACATGAGTTT 822
Query 766 GCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAA-GAGATGAC-GAGT 823
|||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||
Sbjct 823 GCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATG-GACGACCGAGT 881
Query 824 ACCCGTCAACACATCGGGCAATGGTTTGTTCGATTTTTTGCCCTTCCGTTCACAACTCTC 883
| | ||||||||||| ||||| |||||| ||||||| |||| |||||||| ||||| ||
Sbjct 882 AGCGGTCAACACATCAGGCAACGGTTTGCTCGATTTCATGCCGTTCCGTTCGCAACTTTC 941
Query 884 TGC 886
|||
Sbjct 942 TGC 944
> AT1G32300.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr1:11651342-11653365 FORWARD LENGTH=1788
Length=1788
Score = 209 bits (113), Expect = 3e-53
Identities = 175/204 (86%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 686 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 745
||||||| |||| | | |||| |||| ||||||||||||| |||||||||||||||||
Sbjct 692 AGAGATCGTTAACCTTTGTTATGCAAAACGATTCGGATTTCGGAGATCAAGCCGTGACTT 751
Query 746 T-TGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTG 804
| || || ||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 752 TCGGGGAA-AAACATGAGTTTGCAGATTTCTTATGGTTACCAAGCCAAGGCAAAGTGGTG 810
Query 805 TATCGAA-GAGATGAC-GAGTACCCGTCAACACATCGGGCAATGGTTTGTTCGATTTTTT 862
||||||| | || ||| |||| || |||||||| || |||||||| |||||||| |||||
Sbjct 811 TATCGAATG-GACGACCGAGTTCCGGTCAACACTTCAGGCAATGGCTTGTTCGACTTTTT 869
Query 863 GCCC-TTCCGTTCACAACTCTCTG 885
||| |||||| ||||||||||||
Sbjct 870 -CCCATTCCGTCCACAACTCTCTG 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5