BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887422
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46760.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 754 0.0
AT2G46740.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 514 3e-145
> AT2G46760.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr2:19213028-19215166 REVERSE LENGTH=1812
Length=1812
Score = 754 bits (408), Expect = 0.0
Identities = 460/486 (95%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 1 ATGCGTTATGTCACATCTTCTCCGGCCTATCTCGGGAAAGAAACAGAAGCTTTAGACTTT 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1327 ATGCGTTATGTCACATCTTCTCCGGCGTATCTCGGGAAAGAAACAGAGGCTTTGGACTTT 1386
Query 61 GACCTCACGTATTACCGAGCCAAAAATCCGTTAGCACCGCGACTATACGAAGATTTTATA 120
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1387 GACCTCACGTATTACCGAGCCAAAGATCCGTTATCACCGCGACTATACGAAGATTTTATC 1446
Query 121 GAAGAAATCGAGCAAATTGCGTTGTTCAAGTACAACGCCTTGCCGCATTGGGGTAAGAAC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1447 GAAGAAATCGAGCAAATTGCGTTGTTCAAGTATAACGCCTTGCCGCATTGGGGTAAGAAC 1506
Query 181 AGAAATTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAACGTGCCGGCATTCTTCAAA 240
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1507 AGGAACTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAATGTGCCGGCATTCTTGAAA 1566
Query 241 GTTAAAGAAAGCTATGATCCAATGGGTTTATTCTCAAGTGAATGGACCAACCAGATCTTA 300
|| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 1567 GTAAAAGAAAGCTATGATCCAATGGGTTTATTCTCAAGCGAATGGACTGATCAGATCTTA 1626
Query 301 GGAATCAAAGGAAATGTGACGATAATAAAAGATGGATGTGCATTAGAGGGTTTGTGTATA 360
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1627 GGAATCAAAGGAAATGTGACGATAATAAAAGATGGATGCGCATTAGAGGGTTTGTGCGTA 1686
Query 361 TGTTCGGAGGATGCACATTGTGCTCCGACCAAAGGATATTTGTGTCGACCAGGAAAAGTC 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1687 TGTTCGGAGGATGCTCATTGTGCTCCGACCAAAGGATATTTTTGTCGACCAGGAAAAGTC 1746
Query 421 TACATAGAAGCTAGAGTATGTACACGTGTTGATGACATAAGTGTGATCCAATCATTAAGT 480
|||| ||||||||| ||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 1747 TACAAAGAAGCTAGGGTATGTACACGTGCTGATGACATAAGTGTGATTCAATCACTAAGT 1806
Query 481 TACTAA 486
||||||
Sbjct 1807 TACTAA 1812
> AT2G46740.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr2:19205157-19207455 REVERSE LENGTH=1798
Length=1798
Score = 514 bits (278), Expect = 3e-145
Identities = 394/451 (87%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTATGTCACATCTTCTCCGGCCTATCTCGGGAAAGAAACAGAAGCTTTAGACTTT 60
||||||||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||
Sbjct 1315 ATGCGTTATGTCACATCCTCTCCGGCTTATCTTGGAAAAGAAACGGAAGCCATAGACTTT 1374
Query 61 GACCTCACGTATTACCGAGCCAAAAATCCGTTAGCACCGCGACTATACGAAGATTTTATA 120
|| | || |||||||||||||| |||||||| |||||||||| || |||||||||||
Sbjct 1375 GATATAACATATTACCGAGCCAATGATCCGTTAACACCGCGACTCTATGAAGATTTTATC 1434
Query 121 GAAGAAATCGAGCAAATTGCGTTGTTCAAGTACAACGCCTTGCCGCATTGGGGTAAGAAC 180
|||||||||||||||||||||||| ||||||| || || || || ||||||||||||||
Sbjct 1435 GAAGAAATCGAGCAAATTGCGTTGCTCAAGTATAATGCATTACCACATTGGGGTAAGAAT 1494
Query 181 AGAAATTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAACG-TGCCGGCATTCTTCAA 239
||||| ||||||||||||||||||||||||||||||||||| | | || |||||||| ||
Sbjct 1495 AGAAACTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAATGCT-CCAGCATTCTTGAA 1553
Query 240 AGTTAAAGAAAGCTATGATCC-AATGGGTTTATTCTCAAGTGAATGGACCAACCAGATCT 298
||| ||||| || |||||||| ||||| ||||||||| || |||||||| | ||||||
Sbjct 1554 AGTAAAAGAGAGTTATGATCCGAATGG-TTTATTCTCGAGCGAATGGACGGATCAGATCC 1612
Query 299 TAGGAATCAAAGGAAATGTGACGATAATAAAAGATGGATGTGCATTAGAGGGTTTGTGTA 358
|||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1613 TAGGGATCAAAGGAAACCCGACGATAGTAAAAGATGGATGTGCATTGGAGGGTTTGTGTA 1672
Query 359 TATGTTCGGAGGATGCACATTGTGCTCCGACCAAAGGATATTTGTGTCGACCAGGAAAAG 418
||||||| || ||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1673 TATGTTCAGATGATGCTCATTGTGCTCCGTCCAAAGGCTATTTGTGTCGACCAGGAAAAG 1732
Query 419 TCTACATAGAAGCTAGAGTATGTACACGTGT 449
| |||| ||| |||||||| ||||||| |||
Sbjct 1733 TTTACAAAGAGGCTAGAGTCTGTACACATGT 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5