BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887424

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22345.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   828    0.0  


> AT3G22345.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: F-box family protein with a domain 
of unknown function (DUF295) (TAIR:AT3G03730.1); Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; 
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr3:7899215-7900514 FORWARD LENGTH=1300
Length=1300

 Score =  828 bits (448),  Expect = 0.0
 Identities = 544/589 (92%), Gaps = 12/589 (2%)
 Strand=Plus/Plus

Query  4    GATGGACGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACT  63
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  GATGGATGGCAGATGAAGTTTGAGAGGGTTGGTGAGTCTGATTTCTTGAAGACATTCACT  471

Query  64   TATCAAGGAGGCTATGGAAGTTATTCTTCTGGTGAAAGCACCAAAGTTATAATAGAGAAT  123
            ||||  | ||||||| |||||||||||||||||  ||||||||||||| |||||||||||
Sbjct  472  TATCGTGAAGGCTATAGAAGTTATTCTTCTGGTCTAAGCACCAAAGTTGTAATAGAGAAT  531

Query  124  GCGGTTTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCCTTGAGTGC  183
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  532  GCGGTGTTGTGGGTCGATGAAAGAAGCCGAGATTACTTAGTTGTGTGGAGCATTGAGTGC  591

Query  184  TTCTTTGCATATCATAAGAAAGGAGATAATAACAAGAGCTGGAAAGTGTTTCAATTAAAG  243
            ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct  592  TTCTTTGCATATCATAAGAAAGGAGATAATAACAAGACCTGGAAAGTGATTCAATTAAAG  651

Query  244  AAGAATCAAG-GCTGCTCCGATATGGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAGTCC  302
            |||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  652  AAGAATGAAGAG-TGCTCCGATATAGTGTTTAGAGAAAGCAAGCTTTACGTGCTTAATCC  710

Query  303  AAGTCTAAACATTACTATTTTTGATTTCTCTTGTGGTGGTTCTCCAAATGAATGTGCAAG  362
            || ||||||||||||| |||||||||||||| |||||  | |||||||||||||||||||
Sbjct  711  AAATCTAAACATTACTGTTTTTGATTTCTCTAGTGGT--T-CTCCAAATGAATGTGCAAG  767

Query  363  TTTCACAACTCCGGAT---GGTCTCACATTATTTCCACTATATGGTTTCGGCCATCTTGT  419
            ||||||| ||| ||||   ||||||||||||| |||||||| | ||||||||||||||||
Sbjct  768  TTTCACATCTCAGGATATTGGTCTCACATTATATCCACTATCTTGTTTCGGCCATCTTGT  827

Query  420  TATAACTTTGTCCGGAGAGGTTTTGATGATCAAACCCCGC-GCATTTGCGATACCTTCCT  478
            ||||||||||||||||||||||||| |||||||| ||||| | || || ||||  |||||
Sbjct  828  TATAACTTTGTCCGGAGAGGTTTTGCTGATCAAAACCCGCCG-ATATGGGATATATTCCT  886

Query  479  TTGATATTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATATATTCTTTAGGGA  538
            ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  887  TTGATGTTTACAAGATGGATCCAAAATCATCAAAATGGAGAGAAATTTATTCTTTAGGGA  946

Query  539  ACGAAGCA-TTGCTTTTGGATCTAGGAACAACGGTCGCAGCCAAAGATG  586
            | |||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct  947  ATGAAGCAATT-CTTTTGGATCTAGGAACAACGATCGCAGCCAAAGATG  994


 Score =  255 bits (138),  Expect = 3e-67
 Identities = 140/141 (99%), Gaps = 0/141 (0%)
 Strand=Plus/Plus

Query  586   GTAATTACGTTTACGATTTTCTTAAGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAG  645
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1059  GTAATTACGTTTACGATTTTCTTAGGAGGTTGGTTGTCCAACGGTTTCAACACCTTGCAG  1118

Query  646   ATTTATCGCCAGTGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAAT  705
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1119  ATTTATCGCCAGTGCCTTTCAAGGATTCTCGTTGGTTTTTCCCAACTTTTTGTGGCAAAT  1178

Query  706   CGTTGCTCTAAAGCTATCTAG  726
             |||||||||||||||||||||
Sbjct  1179  CGTTGCTCTAAAGCTATCTAG  1199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35214137047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5