BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887426

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255...   422    1e-117
  AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc...   372    1e-102


> AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434 
FORWARD LENGTH=1074
Length=1074

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 246/255 (96%), Gaps = 0/255 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTTGATCGAGCGATTCTCTCT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  167  ATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGTTGATCGAGCGATTCTCTCT  226

Query  61   CTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGAA  120
            |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct  227  CTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAAGCTTGAGAAAGTAATTGAA  286

Query  121  GCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGTTA  180
            || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  287  GCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGAAAGGACAGAGCTTTGTTA  346

Query  181  GCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCATC  240
            |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct  347  GCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAAGTGGATCAATGGGTCATC  406

Query  241  AATGTTGAACAACAA  255
            |||||||||||||||
Sbjct  407  AATGTTGAACAACAA  421


> AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated 
protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040
Length=1040

 Score =  372 bits (201),  Expect = 1e-102
 Identities = 238/256 (93%), Gaps = 2/256 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC  59
            ||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  45   ATGGGGAATTTATTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTCTC  103

Query  60   TCTCAAAACCCAAAGACGCAAGCTTAGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGA  119
            ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  104  TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGA  163

Query  120  AGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGAGCTTTGTT  179
            ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct  164  AGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTT  223

Query  180  AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAAGCAAGTTGATCAGTGGGTCAT  239
            |||||||| ||| ||||| || ||||||||||| ||||||||||| ||||||||| ||||
Sbjct  224  AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCAT  283

Query  240  CAATGTTGAACAACAA  255
            |||||| |||||||||
Sbjct  284  CAATGTCGAACAACAA  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5