BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887430
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 1122 0.0
AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 767 0.0
> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182
REVERSE LENGTH=2829
Length=2829
Score = 1122 bits (607), Expect = 0.0
Identities = 700/743 (94%), Gaps = 14/743 (2%)
Strand=Plus/Plus
Query 50 ACCT-TTCAGAAGGATCCACTGTGTTGACAGATGATTTGGCAACTGGGGATTTAACAGAA 108
|||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2089 ACCTCTGCAGAAGGATCCACTGTGTTGACAGATGAGTTGGCAACTGGGGATCCAACAGAA 2148
Query 109 TCAACGACTGAGCAGAGCGGAGAGGTA---G---C---TGAAAAGTTTATGATTGATGAA 159
||||||||||||||||||||||||||| | | |||||||| |||||||||||||
Sbjct 2149 TCAACGACTGAGCAGAGCGGAGAGGTAGCTGAAACGGTTGAAAAGTATATGATTGATGAA 2208
Query 160 TCAAACCTTTCAGATTATATAGGCAAGCCAGTATTTCAGGCAGAGAAAATATACAAACAG 219
|||||||||||||||||| |||||||||||||||| |||| |||||| ||||| | |||
Sbjct 2209 TCAAACCTTTCAGATTATGTAGGCAAGCCAGTATTCCAGGAAGAGAAGATATATGAGCAG 2268
Query 220 ACACCAGTCGGGGTTGTAATGGGTCTAGCTTGGACATCCATGGGGGGCTCAACATTGTAC 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 ACACCAGTCGGGGTTGTAATGGGTCTAGCTTGGACATCCATGGGGGGCTCAACATTGTAC 2328
Query 280 ATAGAGACAACCTTTGTAGAAGAAGGAGAAGGCAAAGGTGGTCTTCATATAACGGGTCGG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 ATAGAGACAACCTTTGTAGAAGAAGGAGAAGGCAAAGGTGGTCTTCATATAACGGGTCGG 2388
Query 340 CTTGGGGATGTGATGAAAGAAAGCGCAGAGATTGCTCACACAGTCGCCAGAAGAATAATG 399
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2389 CTTGGGGATGTGATGAAAGAAAGCGCAGAGATAGCTCACACAGTCGCGAGAAGAATAATG 2448
Query 400 CTGGAGAAAGAACCGGAGAACAAGTTCTTTGCGAATTCCAAGCTTCATTTACATGTACCT 459
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2449 CTGGAGAAAGAACCCGAGAACAAGTTGTTTGCGAATTCCAAGCTTCATCTACATGTACCT 2508
Query 460 GCAGGAGCCACTCCAAAAGACGGTCCAAGCGCAGGCTGCACCATGATAACTTCATTGCTA 519
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2509 GCAGGAGCCACACCAAAAGACGGCCCAAGCGCAGGCTGCACCATGATAACTTCATTGCTA 2568
Query 520 TCACTTGCCTCGAAGAAGCCAGTAAGGAAGGATCTTGCAATGACCGGAGAAGTCACTTTG 579
|||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2569 TCACTTGCCTTGAAGAAGCCTGTAAGGAAGGATCTTGCAATGACTGGAGAAGTCACTTTG 2628
Query 580 ACGGGTAGAATTCTTGCAATTGGCGGCGTGAAAGAGAAGACAATAGCTGCAA-AGCGGAG 638
|| |||||||| ||||| ||||||||||||||||||||||| |||||||||| | |||||
Sbjct 2629 ACCGGTAGAATCCTTGCGATTGGCGGCGTGAAAGAGAAGACTATAGCTGCAAGA-CGGAG 2687
Query 639 TCAAGTGAAGGTGATAATATTCCCGGAGGCTAACCGGCGAGATTTTGATGAGCTGGCG-G 697
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
Sbjct 2688 TCAAGTGAAGGTGATAATATTCCCTGAGGCTAACCGGAGAGATTTTGATGAGCTGGCGAG 2747
Query 698 AAAACGTGAAAGAAGGGCTCGAAGTTCATTTCGTGAATGAATATGAGCAGATTTTCGAGC 757
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2748 AAA-CGTGAAAGAAGGGCTCGAAGTTCATTTCGTGGATGAATATGAGCAGATTTTCGAGC 2806
Query 758 TAGCCTTTGGCTATGACCATTAG 780
|||||||||||||||||||||||
Sbjct 2807 TAGCCTTTGGCTATGACCATTAG 2829
> AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608
REVERSE LENGTH=2775
Length=2775
Score = 767 bits (415), Expect = 0.0
Identities = 611/705 (87%), Gaps = 15/705 (2%)
Strand=Plus/Plus
Query 88 GCAACTGGGGATTTAACAGAATCAACGACTGAGCAGAGCGGA---G-AGGT---AGC--T 138
||||||||||| | ||||||||||| |||| ||||||||||| | || | | | |
Sbjct 2074 GCAACTGGGGACTCAACAGAATCAAAGACTAAGCAGAGCGGATTGGTAGCTAAAACCTTT 2133
Query 139 GAAAAGTTTATGATTGATGAATCAAACCTTTCAGATTATATAGGCAAGCCAGTATTTCAG 198
|||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||| |||
Sbjct 2134 GAAAAGGTTATGATTGATGAATCAAACCTTGCAGATTACGTAGGCAAACCAGTATTCCAG 2193
Query 199 GCAGAGAAAATATACAAACAGACACCAGTCGGGGTTGTAATGGGTCTAGCTTGGACATCC 258
| |||||| || || |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2194 GAAGAGAAGATCTATGAACAGACACCTGTCGGGGTTGTGATGGGTCTAGCTTGGACATCC 2253
Query 259 ATGGGGGGCTCAACATTGTACATAGAGACAACCTTTGTAGAAGAAGGAGAAGGCAAAGGT 318
||||| |||||||| |||||||| |||||||||||||||||||||||| || ||||||
Sbjct 2254 ATGGGTGGCTCAACGTTGTACATCGAGACAACCTTTGTAGAAGAAGGATTGGGAAAAGGT 2313
Query 319 GGTCTTCATATAACGGGTCGGCTTGGGGATGTGATGAAAGAAAGCGCAGAGATTGCTCAC 378
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 2314 GGTCTTCATATAACGGGTCAGCTTGGGGATGTGATGAAAGAAAGCGCACAGATTGCTCAC 2373
Query 379 ACAGTCGCCAGAAGAATAATGCTGGAGAAAGAACCGGAGAACAAGTTCTTTGCGAATTCC 438
|||||||| |||||||||||| | |||||||||||||||||| || ||||||||||||
Sbjct 2374 ACAGTCGCTAGAAGAATAATGTTTGAGAAAGAACCGGAGAACCTCTTTTTTGCGAATTCC 2433
Query 439 AAGCTTCATTTACATGTACCTGCAGGAGCCACTCCAAAAGACGGTCCAAGCGCAGGCTGC 498
||||||||||||||||| |||| ||||||||| |||||||| || ||||| |||||||||
Sbjct 2434 AAGCTTCATTTACATGTTCCTGAAGGAGCCACACCAAAAGATGGCCCAAGTGCAGGCTGC 2493
Query 499 ACCATGATAACTTCATTGCTATCACTTGCC-TCGAAGAAGCCAGTAAGGAAGGATCTTGC 557
|||||||| ||||| || |||||||||||| | |||||||| |||||||||||||||||
Sbjct 2494 ACCATGATCACTTCGTTCCTATCACTTGCCAT-GAAGAAGCTTGTAAGGAAGGATCTTGC 2552
Query 558 AATGACCGGAGAAGTCACTTTGACGGGTAGAATTCTTGCAATTGGCGGCGTGAAAGAGAA 617
|||||| |||||||||||| | || |||||||||||| ||||||| ||||| || |||||
Sbjct 2553 AATGACTGGAGAAGTCACTCTAACTGGTAGAATTCTTCCAATTGGTGGCGTTAAGGAGAA 2612
Query 618 GACAATAGCTGCAA-AGCGGAGTCA-AGTGAAGGTGATAATATTCCCGGAGGCTAACCGG 675
||| |||||||||| | |||||||| | | ||| |||||||||||||| || || |||
Sbjct 2613 GACTATAGCTGCAAGA-CGGAGTCAGA-TCAAGACAATAATATTCCCGGAAGCAAATCGG 2670
Query 676 CGAGATTTTGATGAGCTGGCGGAAAACGTGAAAGAAGGGCTCGAAGTTCATTTCGTGAAT 735
|||| ||||| ||||| ||||||||| ||||||||||||| || ||||| |||||| ||
Sbjct 2671 AGAGACTTTGAGGAGCTTGCGGAAAACATGAAAGAAGGGCTTGATGTTCACTTCGTGGAT 2730
Query 736 GAATATGAGCAGATTTTCGAGCTAGCCTTTGGCTATGACCATTAG 780
||||||||| |||| ||||| ||||| || ||||||||||||
Sbjct 2731 GAATATGAGAAGATATTCGATCTAGCATTCAATTATGACCATTAG 2775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5