BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887434

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55570.1 | Symbols:  | unknown protein; LOCATED IN: chloropl...   538    1e-152


> AT5G55570.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast; 
Has 35333 Blast hits to 34131 proteins in 2444 species: 
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; 
Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: 
NCBI BLink). | chr5:22514475-22515458 REVERSE LENGTH=742
Length=742

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 355/384 (92%), Gaps = 12/384 (3%)
 Strand=Plus/Plus

Query  1    GTTGGATCAAAACCACTTCAGATAAATTCTACGGCTGGTTTTGTTTCTCCGGgaagaaga  60
            ||| |||||| ||||| ||||||||| || ||||||||||| ||||||||||||||||||
Sbjct  250  GTTAGATCAAGACCACGTCAGATAAAATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGA  309

Query  61   agaagaagaagC--C-ACGGCTTG-ATGATGA-GA--AGTAATCGA-GGACTCAGAACGA  112
            |||||  |  ||  |  ||||  | ||||||| ||  ||||||||| || |||| |||||
Sbjct  310  AGAAGCCGCGGCGGCGGCGGC-GGCATGATGACGATGAGTAATCGACGG-CTCAAAACGA  367

Query  113  CGTCGGCTCTAAGTGAACTGGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT  172
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  368  CGTCGGCTCTAAGTGAACTAGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGT  427

Query  173  GGCAGATTATAGTTGGAACTATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT  232
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  428  GGCAGATTATAGTTGGAACCATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAAT  487

Query  233  TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  488  TCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTT  547

Query  293  -TCAGAGACAAAAAATATTTTCGTTGTCCTGAGTGTGGTGGGTTTCTTCCATGGCAGTCA  351
             || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  548  CTC-GAGACAAAAAGTATTTTCGTTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCA  606

Query  352  TGGAGAAGATTCTTTACAGGCTGA  375
            ||||||||||||||||||||||||
Sbjct  607  TGGAGAAGATTCTTTACAGGCTGA  630



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5