BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887442
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protei... 479 8e-135
AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562... 128 3e-29
> AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:11394675-11395871
REVERSE LENGTH=921
Length=921
Score = 479 bits (259), Expect = 8e-135
Identities = 331/365 (91%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 1 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTA-GAGTTTTTTCC 59
|||||||||||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 559 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGATGTTGCA-AAGGAGTTTCGTCC 617
Query 60 GAA-GAACCCGG-TTGTCAAGACAGCTTACATGAATGTTCTACTCAGTTTGATTGAGACT 117
|| ||| |||| |||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 618 -AACGAA-CCGGATTGTGAAGACAGCGTATATGAATGTTCTACTCAGTTTGATTGAGACT 675
Query 118 TTGGGCCAGCCGCCTCGAGAAATATCAAAGGATGATCTGGCTGGTGCATATGGTTTACTA 177
||| ||||| ||||| ||||||| || ||| ||||||||| |||||||| ||||||||||
Sbjct 676 TTGCGCCAGTCGCCTAGAGAAATCTCTAAGAATGATCTGGATGGTGCATGTGGTTTACTA 735
Query 178 AGATCCATGAAAGAGGCTGGATTTAAGTTGGATTGGTTGGAGAATAAACTGAATGAGGTG 237
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 736 AGATCCATGAAAGAGGCTGGATTTAAGTTGGATTGGTTGGAGAAGAAACTGAATGAAGTG 795
Query 238 TTAAAAAAGAAGGAGAGCGAAGAA-GCTTATGAGACTCGAATGCGAGAAATCGAGGAAGA 296
||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 796 TTAGAAAAGAAGGAGAAAGAAGAAAG-TTATGAGACTCGAATGCGAGAAATCGAGGAAGA 854
Query 297 GATGAAAGACTTGAAGGAAAAAGTGTTGGACGTGGCAGCTCCTTTAAGGTTAGATGATGT 356
|||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 855 GATGAAGGACTTGAAGGCAAAAGCGTTGGACGTGGGAGCTCCTTTAAGGTTAGATGATGT 914
Query 357 TTTCT 361
| |||
Sbjct 915 TGTCT 919
> AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562442-21564067
REVERSE LENGTH=1196
Length=1196
Score = 128 bits (69), Expect = 3e-29
Identities = 242/323 (75%), Gaps = 22/323 (7%)
Strand=Plus/Plus
Query 1 GTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT-TCC 59
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 589 GTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCGTCC 647
Query 60 GAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGACTT 118
|||||||| | | | || ||| | ||||||| |||| ||||| || || ||||| |
Sbjct 648 AAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGACAT 706
Query 119 TGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTTACT 176
|| |||| || |||| |||| ||||||| || ||||| | ||| ||| | | |||
Sbjct 707 TGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGCACT 764
Query 177 AAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAATGA 233
| || | |||||| | || ||||| || ||||||||||||||| ||| || || ||
Sbjct 765 GACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG-GA 821
Query 234 GGTGTTA-AAAAAGAAGGAG-AGCGAAGA-AGCTTATGAGACTCGAATGCGAGAAATCGA 290
||| | |||||||||||| | ||| | | || |||| ||||||| | |||| | ||
Sbjct 822 AGTGA-AGAAAAAGAAGGAGGAA-GAACAGA-CTGGTGAGGCTCGAATTCAAGAACTAGA 878
Query 291 GGAAGAGAT-GAAAGACTTGAAG 312
||| || || ||| || || |||
Sbjct 879 GGAGGA-ATTGAAGGAATTTAAG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5