BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887443

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16340.1 | Symbols: SPK1 | guanyl-nucleotide exchange factor...  1048    0.0  


> AT4G16340.1 | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase 
binding;GTP binding | chr4:9228185-9241317 REVERSE 
LENGTH=6338
Length=6338

 Score = 1048 bits (567),  Expect = 0.0
 Identities = 596/610 (98%), Gaps = 1/610 (0%)
 Strand=Plus/Plus

Query  1     AAGAGAGAGAATA-TTTCTCTTTCGACTGGAAGTGTTCGAGCACGAGTGTTTGATCGCTT  59
             ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  5141  AAGAGAGAGAATATTTTCTCTTTCAACTGGAAGTGTTCGAGCACGAGTGTTTGATCGTTT  5200

Query  60    CTTGTTTGACACACCATTTACAAAAAATGGTAAGACCCAAGGTGGATTAGAAGATCAATG  119
             ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  5201  CTTATTTGACACACCATTTACGAAAAATGGTAAAACCCAAGGTGGATTAGAAGATCAATG  5260

Query  120   GAAGAGAAGAACAGTGCTGCAGACTGAGGGTTCATTCCCTGCGCTTGTGAATAGGCTGTT  179
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  5261  GAAGAGAAGAACAGTGCTGCAGACTGAGGGTTCATTCCCTGCCCTTGTGAATAGGCTGTT  5320

Query  180   GGTTACCAAGTCTGAATCCCTTGAATTCTCGCCAGTGGAGAATGCGATTGGAATGATTGA  239
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5321  GGTTACCAAGTCTGAATCCCTTGAATTCTCGCCAGTGGAGAATGCGATTGGAATGATTGA  5380

Query  240   AACGCGGACAACTGCTCTGAGAAATGAGCTAGAGGAGCCTCGTAGCTCGGATGGGGATCA  299
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5381  AACGCGGACAACCGCTCTGAGAAATGAGCTAGAGGAGCCTCGTAGCTCGGATGGGGATCA  5440

Query  300   CCTACCACGGCTTCAAAGTCTGCAGAGGATTCTCCAAGGAAGTGTTGCAGTGCAGGTGAA  359
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5441  CCTACCACGGCTTCAAAGTCTGCAGAGGATTCTCCAAGGAAGTGTTGCAGTGCAGGTGAA  5500

Query  360   CAGTGGGGTGTTGAGCGTGTGCACAGCATTCTTATCAGGAGAGCCTGCAACTAGATTGCG  419
             ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  5501  CAGTGGGGTGTTGAGCGTGTGCACAGCTTTCTTATCAGGAGAGCCTGCAACGAGATTGCG  5560

Query  420   TTCGCAGGAACTGCAGCAACTGATCGCGGCACTGCTTGAATTCATGGCGGTTTGTAAGCG  479
             ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  5561  TTCACAGGAACTGCAGCAACTAATCGCGGCACTGCTTGAATTCATGGCGGTTTGTAAGCG  5620

Query  480   AGCCATTAGGGTTCACTTTAGATTAATCGGAGAAGAAGATCAGGAATTCCATACTCAGCT  539
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5621  AGCCATTAGGGTTCACTTTAGATTAATCGGAGAAGAAGATCAGGAATTCCATACTCAGCT  5680

Query  540   TGTCAATGGATTTCAGTCTCTCACCGCTGAACTCTCCCATTACATCCCTGCTATCTTGTC  599
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  5681  TGTCAATGGATTTCAGTCTCTCACCGCAGAACTCTCCCATTACATCCCTGCTATCTTATC  5740

Query  600   CGAACTTTAG  609
             ||||||||||
Sbjct  5741  CGAACTTTAG  5750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5