BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887449
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00020.1 | Symbols: PSBA | photosystem II reaction center pr... 324 5e-88
AT2G07688.1 | Symbols: | pseudogene, similar to Photosystem Q(... 316 8e-86
> ATCG00020.1 | Symbols: PSBA | photosystem II reaction center
protein A | chrC:383-1444 REVERSE LENGTH=1062
Length=1062
Score = 324 bits (175), Expect = 5e-88
Identities = 175/175 (100%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT 936
Query 61 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 996
Query 121 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTA 1051
> AT2G07688.1 | Symbols: | pseudogene, similar to Photosystem
Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem
II protein D1)., blastp match of 82% identity and 4.9e-79
P-value to SP|Q9MUW0|PSBA_MESVI Photosystem Q(B) protein (32
kDa thylakoid membrane protein) (Photosystem II protein D1).
{Mesostigma viride} | chr2:3331570-3332664 REVERSE LENGTH=1095
Length=1095
Score = 316 bits (171), Expect = 8e-86
Identities = 179/183 (98%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 913 ATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGT 972
Query 61 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 120
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 973 GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACTTTGGTATAGAAGTTATGCAT 1032
Query 121 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTAAGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCATCTAAGAGG 1092
Query 181 GAA 183
|||
Sbjct 1093 GAA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5