BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887452

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38370.1 | Symbols:  | Plant protein of unknown function (DU...   255    2e-67


> AT2G38370.1 | Symbols:  | Plant protein of unknown function (DUF827) 
| chr2:16072070-16074258 REVERSE LENGTH=1773
Length=1773

 Score =  255 bits (138),  Expect = 2e-67
 Identities = 219/255 (86%), Gaps = 17/255 (7%)
 Strand=Plus/Plus

Query  302  GTATACGCGCATCTGTTGAGCTGTTGAAGAAGAAACTGAATGAGGAAAAGA-CTGAACTT  360
            ||||||||| |||||| |||| ||||||||| ||||||||||||| ||||| ||| ||||
Sbjct  533  GTATACGCGAATCTGTGGAGCAGTTGAAGAATAAACTGAATGAGG-AAAGAGCTGCACTT  591

Query  361  GAGAAGACACGCGAGAGACTTATGCAGAAATCTCTCAAGGTGATTTCTTTAGAGGAAGAA  420
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  592  GAGAAGACACGCGAGAGACTTATGGAGAAATCTCTCAAGGTGTTTTCTTTAGAGGAAGAA  651

Query  421  GAAGTGAGAGTAAGATTCGTCAAGAAGGGTGACACCAGAGATAAAGATCTAGAGAATAAT  480
            ||||||||||||||||| | |||| ||||| | ||| | || |||||||| | ||||   
Sbjct  652  GAAGTGAGAGTAAGATTTGCCAAGGAGGGTCAAACCGGCGAGAAAGATCTTG-GAAT---  707

Query  481  GCGATGGGAATGTTATATGAGGTTCAAAGATTGAGCCGTGAAGCTCAAGAGGTGAAGAAA  540
            |   |     ||  | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  708  G---T-----TG--A-ATGAGGTTCAAAGATTGAGCCGTCAAGCTCAAGAGGTGAAGAAA  756

Query  541  ACAGGAGAGGATGCA  555
            || |||||| |||||
Sbjct  757  ACCGGAGAGAATGCA  771


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 136/158 (86%), Gaps = 8/158 (5%)
 Strand=Plus/Plus

Query  112  GAAAATGTCGAAGAAACTGATATCATTGAACTCAAAGCAGAAGC-TGCTGAGCTACAGAA  170
            |||||| || ||||| |||||||||| | |||||||||| |||| | | |||||||| ||
Sbjct  271  GAAAATATCCAAGAACCTGATATCATGGGACTCAAAGCACAAGCTTTC-GAGCTACA-AA  328

Query  171  -CGATCTAATT-TTGAAAGAAAGCGAAACACTTGAGGTGTTGAAGGAGCTTGAGGCGACT  228
              || |||||| || |||||| ||||||| || |||||||||||||||||||||||||||
Sbjct  329  GAGAACTAATTGTT-AAAGAACGCGAAACGCTAGAGGTGTTGAAGGAGCTTGAGGCGACT  387

Query  229  AAAGCCACAGT-TGTAAAGCTACAGCAGAGGAAGGAAG  265
            ||||||||||| | ||||||| ||||||||||| ||||
Sbjct  388  AAAGCCACAGTCT-TAAAGCTGCAGCAGAGGAATGAAG  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5