BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887461
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsi... 449 5e-126
> AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsic
protein 2E | chr2:16291477-16294034 FORWARD LENGTH=1245
Length=1245
Score = 449 bits (243), Expect = 5e-126
Identities = 261/270 (97%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 747
Query 61 ATTACTGGCACCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATTACTGGCACCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 807
Query 121 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 867
Query 181 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTG 240
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 868 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTC 927
Query 241 AGAAGCCAACTTCACGAGCTTCATGCTTAA 270
|| ||||| ||||| ||||| |||||||||
Sbjct 928 AGGAGCCAGCTTCATGAGCTCCATGCTTAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5