BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887462
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 610 1e-173
AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, ... 486 2e-136
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 610 bits (330), Expect = 1e-173
Identities = 673/834 (81%), Gaps = 42/834 (5%)
Strand=Plus/Plus
Query 730 GCGATGGTATTGCGTGGGAAACCAAG-TGCTTTGGCTCGTGTATTGCCGCCAATGAGGTT 788
||||||||||||||| |||| || | ||||||| || ||||||||| | |||||
Sbjct 918 GCGATGGTATTGCGTAGGAAGCC-TGATGCTTTGACTAATGTATTGCCAACTCTGAGG-- 974
Query 789 CAAGTATAGTAGGTACCGAGAACCA-GACCTGCTTCCGGTTACAGTTTGGATGATAGCTC 847
|| || || ||| | || || || |||||||||||||||||||||||| ||||
Sbjct 975 -GAGAATCCTAAGTATC-AGGGTCAGGATAAGCTTCCGGTTACAGTTTGGATGATGGCTC 1032
Query 848 AGGCCTCCCGAGGTGATTTATTCATG--GCCTTGT-TTACATGGGCGGATACCTTGTTAC 904
||||||||| ||||||| || | || | ||||| || ||||||| | | ||||||||
Sbjct 1033 AGGCCTCCCAAGGTGATATA-GC-TGTAGGCTTGTATT-CATGGGCTCACAACTTGTTAC 1089
Query 905 CAGCAGTC-G--AT----AC--CAACCCTCACTCACA-GAATCTCATCCTGCAGCTGGTT 954
| | ||| | || || |||||||| ||| | | |||||||||||||| |||||
Sbjct 1090 CTGTTGTCGGTAATAAGAACTGTAACCCTCAGTCA-AGGGATCTCATCCTGCAGTTGGTT 1148
Query 955 GAGAATATTTTGTCGCAA-CCAAATGCTCGGACCATACTTGTTGA-GAGAGCTGTCTTTG 1012
||||| |||||| || || ||||| ||||| ||||||||||| | | ||||||| | |
Sbjct 1149 GAGAAAATTTTGACG-AATCCAAAGGCTCGTACCATACTTGTAAATG-GAGCTGT-TAGG 1205
Query 1013 -A-GGATCATG-GAGTGATTCCACCTTCTTCATTTGAGAGCTTGCTGCGGCTTACCTTCC 1069
| ||| | | | ||||||||||| |||||||||||| |||| |||||||||| ||||
Sbjct 1206 AAGGGA-GA-GCGTTTGATTCCACCTCCTTCATTTGAGATCTTGTTGCGGCTTACATTCC 1263
Query 1070 CTGAC-TCATCCGCAAGAGTAAAGGCTACAACA-AGGTTTGAGGCAATTTATCCCTTGTT 1127
||| | ||||| ||||||||||||||||| | | |||||||||||||| ||||||||| |
Sbjct 1264 CTG-CATCATCTGCAAGAGTAAAGGCTAC-AGAGAGGTTTGAGGCAATATATCCCTTGCT 1321
Query 1128 GAAGGAATTGGCTCTTGCCGGTACACCAGGAGGCGAGGCTATGAAAAAAGCCGCTCGACA 1187
||| ||| |||||||||| ||| |||||||| || |||| |||||| ||| | | | |||
Sbjct 1322 GAAAGAAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGGCGATGAAACAAGTCACACAACA 1381
Query 1188 GATATTCATTTTTTCTTTGAGATTAGCTGGGGGAGCAAATCCTGTTTTAGCCAAGGAAGC 1247
|||||||| |||| || ||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 1382 GATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAAATCCTGTTTTAGCCAAGGAAGC 1441
Query 1248 TACATCAATCGCTATCTGGGCTCTGACCGAAAACATAGTTTGCTGCAATCACTGGGACAA 1307
|||| |||| ||||||||| || ||||| ||||| | | ||||||||| |||||||||||
Sbjct 1442 TACAGCAATTGCTATCTGGTCTGTGACCCAAAACTTTGATTGCTGCAAGCACTGGGACAA 1501
Query 1308 TCTCTACGAGAATAATCTAAAAGCTAGTGTTGCTCTTCTTAAAAATCTTGTAGACGAATG 1367
||||||| || | ||||| |||||||||||||| |||||||||| ||||| || |||||
Sbjct 1502 TCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTTGAAGAATG 1561
Query 1368 GAAGGATCATTCTCG-CAAACTATCATCATCACGGAGTAATACTCTCACTCTCAATCAAA 1426
||| || ||||| | ||||||||||||||||| || | || ||||||||||||| | ||
Sbjct 1562 GAAAGAGCATTC-GGTCAAACTATCATCATCACCGAATGATGCTCTCACTCTCAACCGAA 1620
Query 1427 CTATGAAGAGCTTCAGGCTaaaaaacgaaaaaGCT-ATTAATAAAGGAGGAGCCAATGCT 1485
||||||| |||||||||||||| |||| | || | || | | | |||||||||||||||
Sbjct 1621 CTATGAAAAGCTTCAGGCTAAAGAACG-AGGAGGTCATCACTGAGGGAGGAGCCAATGCT 1679
Query 1486 TCTCTTTACAAAGAAGCTGACGAGTCATGCAAAGTGATCTTGGGAAGACTTTCC 1539
||||||||||||||||||||| |||| |||||| ||||| ||| ||||| |||
Sbjct 1680 TCTCTTTACAAAGAAGCTGACAAGTCTTGCAAAACGATCTCGGGGAGACTCTCC 1733
> AT3G11880.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707
Length=1707
Score = 486 bits (263), Expect = 2e-136
Identities = 543/672 (81%), Gaps = 43/672 (6%)
Strand=Plus/Plus
Query 897 CTTGTTACCAGCAGT--CGATACCAACCCTCACTCACA-GAATCTCATCCTGCAGCTGGT 953
||||||||||| | | || || |||| |||| ||| | | |||||||||||||| |||
Sbjct 643 CTTGTTACCAGTA-TCCCG-TAGCAACTCTCAGTCA-ATGGATCTCATCCTGCAGTTGGC 699
Query 954 TGAGAAT-ATTTTGTCGCAA-CCAAATGCTCGGACCATACTTGTTGA-GAGAGCTGTCT- 1009
|||| || |||||||| || | |||||||||| |||||||| | | || | || |
Sbjct 700 TGAG-ATGATTTTGTC-TAATCTTGATGCTCGGACTATACTTGTAAACG-GAACCGT-TA 755
Query 1010 TTGAGGATCATG-GAGTGATTCCACCTTCTTCATTTGAGAGCTTGCTGCGGCTTACCTTC 1068
| || | || | || ||||| |||||| | |||||||| |||| |||||||||| |||
Sbjct 756 TAGATAAACA-GCGACTGATTTCACCTTATGCATTTGAGCTCTTGATGCGGCTTACATTC 814
Query 1069 CCTGAC-TCATCCGCAAGAGTAAAGGCTACAACA-AGGTTTGAGGCAATTTATCCCTTGT 1126
|||| | ||||| | ||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 815 CCTG-CTTCATCTGAAAGAGTAAAGGCTAC-AGAGAGGTTTGAGGCAATTTATCCCTTGT 872
Query 1127 TGAAGGAATTGGCTCTTGCCGGT-ACACCAGGAGGCGAGGCTA-TGAAAAAAGCCGCTCG 1184
|||||||| ||||||||||| || | ||||||| ||||| || ||||| ||| | |||
Sbjct 873 TGAAGGAAGTGGCTCTTGCCTGTGA-ACCAGGAAGCGAGT-TAATGAAACAAGTCACTCA 930
Query 1185 ACAGATATTC-ATTTTTTCTTTGAGATTAGCTGGGGGA-GCAAATCCTGTTTTAGCCAAG 1242
||| |||||| ||| || |||||| | ||||||| || | ||||| |||||||||||||
Sbjct 931 ACAAATATTCCATTATT-CTTTGATAATAGCTGGAAGAAG-AAATCTTGTTTTAGCCAAG 988
Query 1243 GAAGCTACATCAATCGCTATCTGGGCTCTGACCGAAAACATAGTTTGCTGCAATCACTGG 1302
||||||||| |||||||| ||||| |||||||||||||| ||| ||||||||| || |||
Sbjct 989 GAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAACGTAGATTGCTGCAAGCAGTGG 1048
Query 1303 GACAATCTCTAC-GAGAATAATCTAA-AAGCTAGTGTTGCTCTTCTTAAAAATCTTGTAG 1360
|| || ||||| | || ||| || |||||||||||||| |||||||||| |||||||
Sbjct 1049 GAAAAACTCTATTGGGAG-AATA-AAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAG 1106
Query 1361 ACGAATGGAAG-GATCATTCTCG--CAAACTATCATCATCACGGAGTAATAC-TCTCACT 1416
| ||| || | ||| ||| || ||||||| ||||||||| |||| ||| | ||||
Sbjct 1107 ATGAAAGGG-GTGAT-ATT-TCCATCAAACTAGCATCATCACCGAGTCATAAAT-TCACA 1162
Query 1417 CTCAATCAAACTATGAAGAGCTTCAGGCTaaaaaacgaaaaaGCTATTAATAAAGGAGGA 1476
||||||||||||||| ||||| |||||||||||||||||||||| || | | ||||||||
Sbjct 1163 CTCAATCAAACTATGGAGAGCATCAGGCTAAAAAACGAAAAAGCCATCACTGAAGGAGGA 1222
Query 1477 GCCAATGCTTCTCTTTACAAAGAAGCTGACGAGTCATGCAAAGTGATCTTGGGAAGACT- 1535
||| || ||||| |||||||||||||||| |||| ||||||||||| | ||| ||| |
Sbjct 1223 ACCATTGGTTCTCGTTACAAAGAAGCTGACAAGTCCTGCAAAGTGATGTCGGGTAGATTC 1282
Query 1536 TTCC-TGGAAAA 1546
|||| || ||||
Sbjct 1283 TTCCCTG-AAAA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5