BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887464

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39090.1 | Symbols: APC7, AtAPC7 | tetratricopeptide repeat ...   654    0.0  


> AT2G39090.1 | Symbols: APC7, AtAPC7 | tetratricopeptide repeat 
(TPR)-containing protein | chr2:16312691-16317300 REVERSE 
LENGTH=1824
Length=1824

 Score =  654 bits (354),  Expect = 0.0
 Identities = 377/388 (97%), Gaps = 2/388 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGGTTCCAAAGGATCAGATCGCGAATCTT-ATAGAGCATGGGCTCTACGATTCTGC  59
            ||||||||||||||||| |||||||||| | || |||||||||||||| |||||||||||
Sbjct  68   ATGGAGGTTCCAAAGGAGCAGATCGCGACT-TTAATAGAGCATGGGCTTTACGATTCTGC  126

Query  60   TGAAATGCTTGGCTGCTTTCTCGTTTCTTCTTCTACTGTTAGCGCCGAAACTAGTCCTCA  119
            ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  127  TGAAATGCTCGGCTGCTTTCTCGTTTCTTCTCCTACTGTTAGTGCCGAAACTAGTCCTCA  186

Query  120  GCTCAAGGCGGAGAATTTGATTCTACTGGGCGATGCTTTATTTCATCAGAGAGAACACCG  179
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  187  GCTCAAGGCGGAGAATTTGATTCTACTGGGTGATGCTTTATTTCATCAGAGAGAACACCG  246

Query  180  GAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCGAAGCAAAG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  GAGAGCTATTCATACGTACAAGCAAGCGTTGCATCATTACACAAGGATTCCGAAGCAAAG  306

Query  240  CTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACAAGATCATCTGTGAATGCCTCTAG  299
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  307  CTCCGGTATTTCGAGGAGTTCATTATCTTTATCTACCAGATCATCTGTGAATGCCTCCAG  366

Query  300  CATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCACTTTGCTCT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  CATTTCTGCTATTAATGAGAACGAGGTGAGATTCAAGATTGCTTCATCTCACTTTGCTCT  426

Query  360  TAATGAAACAAAAGCTGCGATTGCTGAG  387
            ||||||||||||||||||||||||||||
Sbjct  427  TAATGAAACAAAAGCTGCGATTGCTGAG  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5