BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887478
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06420.1 | Symbols: ATG8H | Ubiquitin-like superfamily prote... 346 6e-95
> AT3G06420.1 | Symbols: ATG8H | Ubiquitin-like superfamily protein
| chr3:1954990-1956397 REVERSE LENGTH=712
Length=712
Score = 346 bits (187), Expect = 6e-95
Identities = 201/208 (97%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 39 ATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATTCATATGCTAAGCAAAAGGAT 98
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 276 ATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGAT 335
Query 99 GCACTTAGATCGATCCAAAGCTCTCTTTGTTTTCGTACACAACACACTTCCTCAAACCGC 158
||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 336 GCAGTTAGATCCATCCAAAGCTCTCTTTGTTTTCGTACACAACACTCTTCCTCAAACCGC 395
Query 159 TAGTCGCATGGACTCTCTCTACAATACTTTCAAAGAAGAAGATGGGTTCTTGTACATGTG 218
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 396 TAGTCGCATGGACTCTCTCTACAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTG 455
Query 219 CTACAGCACCGAGAAAACTTTTGGCTAA 246
||||||||||||||||||||| ||||||
Sbjct 456 CTACAGCACCGAGAAAACTTTCGGCTAA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5