BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887492

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50740.3 | Symbols:  | Heavy metal transport/detoxification ...   721    0.0  


> AT5G50740.3 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr5:20635866-20637977 REVERSE LENGTH=997
Length=997

 Score =  721 bits (390),  Expect = 0.0
 Identities = 432/452 (96%), Gaps = 3/452 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGGagaagaaagctgaagagccccaagtgaaatcagaagataagaaaccagcagaa  60
            ||||||||||||||| |||||||||| |||| ||||||||||||||||||| |  |||||
Sbjct  29   ATGGAGGAGAAGAAATCTGAAGAGCCACAAGCGAAATCAGAAGATAAGAAA-C--CAGAA  85

Query  61   gaagagaagaagaaagagcctcaagagaTTGTGCTCAAGATTTTTATGCATTGTGAAGGT  120
            |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  86   GAAGAGAAAAAGAAAGAACCTCAAGAGATTGTGCTTAAGATTTTTATGCATTGTGAAGGT  145

Query  121  TGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAAGATGTAACTACA  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  146  TGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAGGATGTAACTACT  205

Query  181  GATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTGAAAGTGTTG  240
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  206  GATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTAAAAGTGTTG  265

Query  241  CAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACCAATTCCGGAGCCT  300
            |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  266  CAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACCGATTCCGGAGCCT  325

Query  301  AAACCAGTTTCCGATGTACCggagaaaaaggagaaggagaaacctaaacctgaggagaaa  360
            ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  326  AAACCGGTTTCTGATGAACCGGAGAAAAAGGAGAAGGAGAAACCTAAACCTGAGGAGAAA  385

Query  361  aaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  AAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG  445

Query  421  GAGATTCAAAAGAGAATCATGAGAATGAAAGG  452
            |||||||||||||| |||||||||||||||||
Sbjct  446  GAGATTCAAAAGAGGATCATGAGAATGAAAGG  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5