BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887494
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45090.1 | Symbols: AtPP2-A7, PP2-A7 | phloem protein 2-A7 |... 1140 0.0
> AT5G45090.1 | Symbols: AtPP2-A7, PP2-A7 | phloem protein 2-A7
| chr5:18202753-18205000 REVERSE LENGTH=999
Length=999
Score = 1140 bits (617), Expect = 0.0
Identities = 780/858 (91%), Gaps = 14/858 (2%)
Strand=Plus/Plus
Query 3 GTCACAGGAAGAAGATGTGAGTAAAGGTCTGATCAATTTTCTCGAACCTATCTTAAAAAA 62
||| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 141 GTCGCAAGAAGAAGATGTGAGCAAAGGTCTGATCAATTTTCTCGAACCGGTCTTACAAAA 200
Query 63 CGAAAATATAAATGTCTTCATAGACGAAGAAACA-GTACGAGGAAAAGATCTAAAGAATC 121
| |||||||||||||||||||||||| || || | ||| |||| |||| |||||||||||
Sbjct 201 CAAAAATATAAATGTCTTCATAGACG-AGGAAGAGGTAAGAGGCAAAGGTCTAAAGAATC 259
Query 122 TGTTTAAAAGAATCCAGGACACGAGGATCTCACTGGCTATCTTTTCAGAGTCAAAATGTG 181
|||||||||||||||||||| | | ||||||||| || ||||||||||||||||||||||
Sbjct 260 TGTTTAAAAGAATCCAGGACTCAAAGATCTCACTCGCGATCTTTTCAGAGTCAAAATGTG 319
Query 182 ATTTTAATGAGCTACGGAAG-ATCAAAGAACCCGTCGATGAAGCGATTCCTATATTCTAC 240
|||||||||| ||| |||| || || ||| ||| |||||||||||||||||||||||||
Sbjct 320 ATTTTAATGATTTACTGAAGAAT-AATGAATCCGCCGATGAAGCGATTCCTATATTCTAC 378
Query 241 AAGGTAGATGCGATTGGAGACTTGGCTGATCTCCAAAACA--G----GTGCAAGAAAGAT 294
||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||
Sbjct 379 AAGGTAGATGCGACTGGAGACTTGGCCGATCTCCAAAACAGCGTAAAGTGCAAGAAAGAT 438
Query 295 CTCATAAATTCTGCCGTGGAGGAAATGAGTAGATTGCTAGCGAATATTTCTGTGGAAGTA 354
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 439 CTCATAAATTCTGCCGTGGAGGAAATGAGTAAATTGCTGGCGAATATTTCTGTGGGAGTA 498
Query 355 AACAGAGAAAAAGAAGGAAATCA-CAAATGTTTTATGGTCCCTGCAAGGAAACTTCAGAT 413
||||||||||||||| |||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 499 TACAGAGAAAAAGAAGCAAAT-AGCAAATGTTTCATGGTCCCTGCAAGGAAACTCCAGAT 557
Query 414 CAGTCACTCGGAGAAGCTAATAAACTGGACCTGGAGTTCTATCTACGAGGCACCAAATGA 473
|||||||||||||| || ||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 558 GAGTCACTCGGAGAAACTGATAAATTGGACATGGAGTTCTATCTACGAGACACCAAATGA 617
Query 474 AGCTGCCATTGAAATTGCGATGTTAAATGAAGTTTATTGGCTACACATGTCTGGAAACTT 533
||||| |||||| |||| ||||| |||||||| | ||||| |||||||||||||| ||
Sbjct 618 CGCTGCAATTGAAGTTGCCATGTTGAATGAAGTCCACTGGCTGCACATGTCTGGAAATTT 677
Query 534 TCACACAAGAAATCTAACACCTGGGACAAAATATGAGGTTGTGTTTCTGGTGAGTTTAGA 593
||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||
Sbjct 678 TCACACAAGAAATCTGACACCAGGGACAAAATATGAGGTTGTCTTTTTGGTGAGCTTAGA 737
Query 594 GGATACATCTTTTGGATGGGATCAGCCGGTGAATCTGAACTTGAAGCTAATTAATCCAGA 653
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 738 TGATACATCTTCAGGATGGGAGCAGCCGGTGAATCTGAACTTGAAGGTAATTAATCCAGA 797
Query 654 TGGAACTGAGAGTTTTCAGGAGCGA-ACAACAAGCTTGGAATGTCACATAGGCGAAAACT 712
||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 798 TGGAACTGAGAGTTTGCAGGAGCGAGA-AACAAGCTTGGAATGTCACATAGGTGAAAACT 856
Query 713 GGGTGGATATTCAAGCTGGAGTTTTGGTGGCACCGCCTAGGAATGCGGCCGCAAAGATGA 772
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 857 GGGTGGATATTCAAGCTGGAGTTTTGGTGGCACCTCCTAGGAATGCGGCCGCAAAGATGA 916
Query 773 CTTTCACCATGTATCAATATGTGACCAGTGACCGGAAGAGCGGGCTCCTGGTCAAAGGTG 832
|||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 917 CTTTCACCATGTATCAGTATGTGACTAGTGACCGGAAGAGCGGGCTCGTGGTCAAAGGTG 976
Query 833 TTGCTATTCGTCCCATGC 850
||||||||||||||||||
Sbjct 977 TTGCTATTCGTCCCATGC 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5