BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887495
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6 |... 1620 0.0
> AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6
| chr5:18191575-18193207 REVERSE LENGTH=1179
Length=1179
Score = 1620 bits (877), Expect = 0.0
Identities = 1086/1187 (91%), Gaps = 13/1187 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAAGTGTTCATATGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTTCCTCGGTTGTGAAACCCACCCCAACGGGGCCTCAGGTGTTCATATGC 60
Query 61 TTCCGGGGAGCAGATGTCCG-ATCACACTTCATAAGCCATCTTGACCCTGCCTTGAGAGA 119
|||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||
Sbjct 61 TTCCGGGGAGCAGATGTCCGCA-AACACTTCATAAGCTTTCTTGTCCCTGCCTTGAGAGA 119
Query 120 AGCGAATATAAACGTCTTCATAGATGATG-ACGAGTTTTTGGGCACAGATTTGGTTAACC 178
|||||| |||||||||||||||||||| | |||||||||||||| |||| ||| |||||
Sbjct 120 AGCGAACATAAACGTCTTCATAGATGA-GAACGAGTTTTTGGGCTCAGAAATGGCTAACC 178
Query 179 TTTTGAAGAGGATAGAAGAGTCAGAGATCGCGCTAGTGATCTTTTCGGAGGATTTCACAA 238
| |||| |||||| |||||||| ||| ||||||||||||| ||||| | |||||||||||
Sbjct 179 TATTGACGAGGATTGAAGAGTCTGAGCTCGCGCTAGTGATATTTTCCGTGGATTTCACAA 238
Query 239 GTTCGTATAGGTGCTTGGATGAGCTGGCCAAGATCAAGGAATGCAAGGATCAAGGCCGTC 298
| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 GATCGCATAGGTGCTTGAATGAGCTGGCCAAGATCAAGGAACGCAAGGATCAAGGCCGTC 298
Query 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGTTGTGAAATATCTTAAAGGAA 358
||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||
Sbjct 299 TCATAGTGATTCCCATCTTCTACAAAGTTAAACCTTCCGCTGTAAAATTTCTTGAAGGAA 358
Query 359 ATTTTGGCGATAATTTCAGGGAACTAGAACGCAATAATCTACACATGCAACAAAGAACTC 418
| ||||||||||||||||||| || ||||||||||||| |||||||| || || |||||
Sbjct 359 AATTTGGCGATAATTTCAGGGCTCTGGAACGCAATAATCGACACATGCTACCAATAACTC 418
Query 419 AGAAATGGAAGAAAGCTTTAGTGTCTATCCCGGAATCAAAAGGGATGCCAAGGGCAGAAC 478
||||||||||| |||| |||| ||||||||||| ||||| ||| ||||| ||| ||||
Sbjct 419 AGAAATGGAAGGAAGCATTAGAGTCTATCCCGGGATCAATAGGCATGCCCTTGGCTGAAC 478
Query 479 AAAGTGAGAAGACCGATAAAGACTTCATAACCTCAATGGTCATCAAGATTCAAGAATTAC 538
||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 479 AAAGTGAGAGGACCGATAATGACTTCATAAACTCAATGGTCATCAAGATTCAACAATTAC 538
Query 539 TGGATTATATGGCTGCCAGAAGAAACAAAGAAATAGAAGCG-AATCGTCAAGGAGTTTCC 597
|||| ||||||||| ||||||||||| |||||||||||| || ||| || |||||||
Sbjct 539 TGGAGAATATGGCTGTGAGAAGAAACAATGAAATAGAAGCGCAA-CGTAAATTAGTTTCC 597
Query 598 ATCGTCCCTGCAAGGAAACCAAAAGCAGAAGCGAATCCTCAAGGAGGTTCCGTGGTCCCT 657
||||||||| ||| |||||| |||| ||||||||||||||||||||||||| |||| ||
Sbjct 598 ATCGTCCCTCCAAAGAAACCGAAAGGAGAAGCGAATCCTCAAGGAGGTTCCATGGT-CC- 655
Query 658 GCTGCAAGGGAGCAAGAAAGAGAAGCGAGTCATCAAGGAGGTTCCGTGGTCCCGTCCATG 717
|||||||| ||| |||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 656 -CTGCAAGGAAGCCAGAAAGAGAAGCGAGTCAGGAAGGAAGTTCCGTGGTCCCTTCCATG 714
Query 718 GTCCTTGCAAGGGATTTAGTA-ATCACTCATTTTGATAAACCTCAAAGATGGACTTGGAG 776
|||| |||||||||||||| | ||||| |||| ||| |||||||||| ||||||||||||
Sbjct 715 GTCCCTGCAAGGGATTTAG-ACATCACACATTCTGAGAAACCTCAAAAATGGACTTGGAG 773
Query 777 TACTATCAACGAGGCACCAAACTCTGCGGAAATTGAGATTGCGACGTCGAATAAACTTTA 836
||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 774 TACCATCAACGAGGCACCAAACTCTGCGGAAATTGAAATTGCGACGTTGAATAAAGTTTA 833
Query 837 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAACTAAGTACGA 896
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 834 CTGGCTTAAAATAGTGGGAACAATAACTACGGAGAATCTAACACCAGGAGCTAAGTACGA 893
Query 897 GGCTGTATTCGTAGTGAAATTAGAAATTAATGCTAGTGGATGGGA-TATACCAGTGACTC 955
||||||||||||||| |||||||||| |||||||||||||||||| | |||||||| ||
Sbjct 894 GGCTGTATTCGTAGTCAAATTAGAAAATAATGCTAGTGGATGGGAGCA-ACCAGTGAATC 952
Query 956 TAAAGCTGAAGGTGGTACAACACGATGGGGACGATGATCGGGTGGATCGAACAGAGAACT 1015
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 TAAAGCTGAAGGTGGTACAACACGATGGGGACGACGATCGGGTGGATCGAACAGAGAACT 1012
Query 1016 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TGAACGATTACATAGGCCAGAACTGGGTGGATATTTTGGCCGGAGTTTTCGTGGTTCCGC 1072
Query 1076 CAAAAACCACTCCCGCAACGATCATTTGCACCATGTATCAGTACGCGGACGAGTATAAGA 1135
||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 1073 CAAAAACTACTCCCGCAACGATCATTTTCACCATGTATCAGTACGAAGACAAGTATAAGA 1132
Query 1136 AAAAGGGACTCGTCGTCAAAGGTCTTGCAATACGTCCCACGAACTAA 1182
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1133 AAAAGGGACTCGTCGTCAAAGGTGTTGCAATACGTCCCACGAACTAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5