BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887503
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44565.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 333 4e-91
> AT5G44565.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17951512-17953133
FORWARD LENGTH=576
Length=576
Score = 333 bits (180), Expect = 4e-91
Identities = 209/223 (94%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATGAGTGGTTCTTCAGGTTTAGGTCATGTGCTCATGCTTCTTCTTCTTCTTAGC 60
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 84 ATGGGAATGAGTGGTTCTTCAGGTTTAGTTCATGTGCTCATGCTTCTTCTTCTTCTCAGC 143
Query 61 ACCCTCTTTCACCATACCCAATCTGCTTTGCCCTCTGATCA-TGAACAACTCTCAATAAC 119
| |||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||
Sbjct 144 ATCCTCTTTCACCATACCGAATCTACTTTGCCCTCTGAT-AGTGAACAACTCTCAATAAC 202
Query 120 TGGGAGGAGAATGATGGCGAATTATAAGCCCAATGCTCCAATACAAACACCACCATCAAG 179
|||||||||||||||||||||||||||||||||| | || || ||||||||||||||||
Sbjct 203 TGGGAGGAGAATGATGGCGAATTATAAGCCCAATACAGCAGTAGAAACACCACCATCAAG 262
Query 180 AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGGAGATTGA 222
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 263 AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGCAGATTGA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5