BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887505
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:1794... 1099 0.0
AT5G44562.1 | Symbols: | other RNA | chr5:17947617-17948398 RE... 213 2e-54
> AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17945957-17948400
FORWARD LENGTH=971
Length=971
Score = 1099 bits (595), Expect = 0.0
Identities = 647/672 (96%), Gaps = 3/672 (0%)
Strand=Plus/Plus
Query 1 ATGAACATCTTCAAGAAGAAGACCACTCCCAAAGATGCTCTTCGTACCAGTAAGAGAGAA 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 125 ATGAACATTTTCAAGAAGAAGACCACTCCCAAAGATGCTCTTCGTACTAGTAAGAGAGAA 184
Query 61 ATGGCTGTGGCTACACGAGGTATCGAACGGGAGATTACATCTCTTCAACTAGAGGAGAAG 120
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATGGCTGTTGCTACTCGAGGTATCGAACGGGAGATTACATCTCTTCAACTAGAGGAGAAG 244
Query 121 AGACTAGTTGCAGAGATCAAGAAAACAGCTAAGACTGGAAATGAGGCTGCCACAAAGATT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGACTAGTTGCAGAAATCAAGAAAACAGCTAAGACTGGAAATGAGGCTGCCACAAAGATT 304
Query 181 TTAGCTCGTCAACTTGTTCGATTGAGGCAACAGATTACCAACTTACAGGGAAGTCGTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 305 TTAGCTCGTCAACTTGTTCGATTGAGGCAACAGATTACCAACTTACAAGGAAGCCGTGCT 364
Query 241 CAGATTAGGGGTGTGACGACTCATACACAGGCTCTGTATGCCAGCACTTCGATATCATCT 300
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 365 CAGATTAGGGGTGTAACAACTCATACACAGGCTCTGTATGCCAGCACTTCGATTTCATCT 424
Query 301 GGCATGAAAGGTGCTACCAAAGCTATGGTTGCAATGAACAAGCAAATGGCACCCACTAAA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 425 GGTATGAAAGGTGCTACCAAAGCTATGGTTGCAATGAACAAGCAAATGGCACCAACGAAA 484
Query 361 CAAGCCAAGGTGATTAAGGATTTCCAGAAGCAGTCGGCACAGCTAGACATGACGATAGAG 420
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 485 CAAGCCAAGGTGATTAAAGATTTCCAAAAGCAGTCGGCACAGCTAGACATGACGATAGAG 544
Query 421 ATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 ATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGAAACAGAA 604
Query 481 GATCTCACTAACCAAGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAGTTATCTTCA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GATCTCACTAACCAGGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAGTTATCTTCA 664
Query 541 GCTCCTAAAGGCCGGATTGCTACAAAAACCGCAGCTCCTCCCGCTTCCACTGCAGCAACT 600
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 665 GCTCCAAAAGGTCGGATTGCTACGAAAACCGCAGCTCCTCCCGCTTCCACTGCAGCTACT 724
Query 601 AAAAACAACAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGAGGTTGGCTTCGCTT 660
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AA---CAAGAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGAGGTTGGCTTCGCTA 781
Query 661 CGACGAATCTGA 672
||||||||||||
Sbjct 782 CGACGAATCTGA 793
> AT5G44562.1 | Symbols: | other RNA | chr5:17947617-17948398
REVERSE LENGTH=696
Length=696
Score = 213 bits (115), Expect = 2e-54
Identities = 117/118 (99%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 414 GATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGA 479
Query 474 AACAGAAGATCTCACTAACCAAGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAG 531
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 AACAGAAGATCTCACTAACCAGGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAG 421
Score = 189 bits (102), Expect = 3e-47
Identities = 132/146 (90%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 529 CAGTTATCTTCAGCTCCTAAAGGCCGGATTGCTACAAAAACCGCAGCTCCTCCCGCTTCC 588
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 321 CAGTTATCTTCAGCTCCAAAAGGTCGGATTGCTACGAAAACCGCAGCTCCTCCCGCTTCC 262
Query 589 ACTGCAGCA-ACTAAAAACAA-CAACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGA 646
|||||||| | | || | || |||||||||||||||||||||||||||||||||||
Sbjct 261 ACTGCAGCTTAGTTTAA-CTTGCAGCTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGA 203
Query 647 GGTTGGCTTCGCTTCGACGAATCTGA 672
||||||||||||| ||||||||||||
Sbjct 202 GGTTGGCTTCGCTACGACGAATCTGA 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5