BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887514
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29045.1 | Symbols: LCR62 | low-molecular-weight cysteine-ri... 233 4e-61
AT4G30064.1 | Symbols: LCR61 | low-molecular-weight cysteine-ri... 150 4e-36
> AT2G29045.1 | Symbols: LCR62 | low-molecular-weight cysteine-rich
62 | chr2:12476372-12477107 FORWARD LENGTH=237
Length=237
Score = 233 bits (126), Expect = 4e-61
Identities = 174/197 (88%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 2 TTGTGATGTTAGCCTTAGTTGAACAAAATATGGGATGCATGGCAGTTCTTGGCTCGTGCG 61
|||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 44 TTGTTATGTTCGCCTTAATTGAACAAAATATGGGATGCATGGCGGTTCTTGGCTCGTGTG 103
Query 62 GTGTTATTACAGACTGCAGTGGGACATGCAAGACTAAGTTTGGACAAGATGCGAGTGGCG 121
|||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 104 GTGTCATTACAGATTGCAGTGGGTCATGCAAGACTAAGTTTGGACAAGATGCTAGTGGCG 163
Query 122 ATTGTGACCGCGACGGTGGTGTTGGAACATGTGTTTGTGGTTATTCGTGTCCATCACCTC 181
|||||||||| ||||||||| ||||||||| | ||||||||| | |||||| || |
Sbjct 164 ATTGTGACCGTGACGGTGGTCAAGGAACATGTATGTGTGGTTATCCTTGTCCA-CA--TG 220
Query 182 ATAAGCCCCATATGTGA 198
|||||| |||||||||
Sbjct 221 ATAAGCTACATATGTGA 237
> AT4G30064.1 | Symbols: LCR61 | low-molecular-weight cysteine-rich
61 | chr4:14694302-14694643 FORWARD LENGTH=237
Length=237
Score = 150 bits (81), Expect = 4e-36
Identities = 163/201 (81%), Gaps = 11/201 (5%)
Strand=Plus/Plus
Query 2 TTGTGATGTTAGCCTTAGTTGAACAAAATATGGGATGCATGGCAGTTCTTGGCTCGTGCG 61
|||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 44 TTGTAATGTTTGCATTAGTTGAGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTG 103
Query 62 GTGTTATTACAGACTGCAGTGGG-ACATGCAAGACTA-AGTTTGGACAAGATGCGA-GTG 118
|||| ||||| ||||| |||||| | ||||| ||| | ||||||| | | || | |||
Sbjct 104 GTGTGATTACCGACTGTAGTGGGGA-ATGCATTTCTAGA-TTTGGACCACAAGC-ACGTG 160
Query 119 GCGATTGTGACCGCGACGGTGGTGT-TGGAACATGTGTTTGTGGTTATTCGTGTCCATCA 177
|| | |||||||| || |||||| | ||||||||||||||| | |||| | ||||| |
Sbjct 161 GCTACTGTGACCGAGATGGTGGT-TCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGC- 218
Query 178 CCTCATAAGCCCCATATGTGA 198
| ||||||| |||||||||
Sbjct 219 --TGATAAGCCACATATGTGA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8802736425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5