BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887522
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39980.1 | Symbols: | HXXXD-type acyl-transferase family pr... 665 0.0
> AT2G39980.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr2:16687673-16689956 REVERSE LENGTH=2284
Length=2284
Score = 665 bits (360), Expect = 0.0
Identities = 413/439 (94%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1 CAAAGCAACGATAAACTTAACGGAAAAGAAGACGGTATATTAACGGAAATGTTGGAGAGT 60
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 855 CAAAGCAACGATAAACTTAACGGAAAAGAAAACGGTATTTTAACGGAAATGTTGGAGAGT 914
Query 61 TTGTTTGGAAGAAACGACGCCGTTTCGAAACCCGTTGTGGTTGAGATCTCGTCGTTCCAG 120
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 915 TTGTTTGGGAGAAACGACGCCGTTTCGAAACCCGTCGCGGTTGAGATCTCGTCGTTTCAA 974
Query 121 TCTCTATGTGCGTTGCTTTGGCGTGCGATCACTCGTGCGAGGAAGCTTCCGAGTTCAAAA 180
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 975 TCTCTATGCGCGTTGCTTTGGCGTGCGATCACACGTGCGAGGAAGCTTCCGAGTTCGAAA 1034
Query 181 ACGACTACGTTTCGTATGGCTGTAAATTGTCGCCACCGGTTAAGTCCTAAGTTGAATCCG 240
||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||
Sbjct 1035 ACGACTACGTTTCGTATGGCTGTGAATTGTCGTCACCGTTTGAGTCCTAAACTGAATCCG 1094
Query 241 GAGTATTTCGGAAACGCGATTCAGAGCGTTCCGACGTTTGCGACTGCGGGGGAGGTTTTG 300
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1095 GAGTATTTCGGAAACGCGATTCAAAGCGTTCCTACGTTTGCGACTGCGGCAGAGGTTTTG 1154
Query 301 TCTCGTGATCTTAAATGGTGCGCCGATCAGCTTAACCAGAGTGTTGCGGCTCATCAAGAC 360
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCACGTGATCTTAAATGGTGCGCTGATCAGCTTAACCAGAGTGTTGCGGCTCATCAAGAC 1214
Query 361 GGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAGCGAATCCTC-GGTGTTTTCCTCTTGG 419
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1215 GGGAGGATTCGTAGCGTTGTGGCGGATTGGGAAGCGAATCC-CAGGTGTTTTCCTCTTGG 1273
Query 420 AAATTCTGACGGAGCTTCG 438
|||| | ||||||||||||
Sbjct 1274 AAATGCCGACGGAGCTTCG 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5