BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887523
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21060.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1999 0.0
> AT3G21060.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:7377434-7380213 FORWARD LENGTH=2303
Length=2303
Score = 1999 bits (1082), Expect = 0.0
Identities = 1166/1208 (97%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 1 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCGGAGGTGATTGAAGAATAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 389 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCTGAGGTGATTGAAGAATAT 448
Query 61 CTGGAACATGGTGTCATTAAATGTGTTGCCTTTAACCACCGTGGTTCTCTTCTCGCTGCG 120
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 449 CTGGAACATGGTGTCATTAAATGCGTTGCCTTTAATCACCGTGGTTCTCTTCTCGCTGCT 508
Query 121 GGATGTGCCGATGGGGGATGTGTAATCTGGGATTTCGAAACTAGAGGCATTGCAAAGGAG 180
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 509 GGATGTGCCGATGGTGGCTGTGTAATCTGGGATTTCGAAACAAGAGGCATTGCAAAGGAG 568
Query 181 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 628
Query 241 CGCTTGCTTGTGTCTGCTGCAGACAAGTCATTAACTCTTTGGGATGTCTCTACCGGAGAG 300
||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 629 CGCCTGCTTGTCTCAGCTGCAGATAAGTCATTAACTCTTTGGGATGTCTCAACCGGAGAG 688
Query 301 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTA 748
Query 361 AGTTCTCCTTCTCTCTGTCTGGCGTGCCCGCTCTCTTCTGCTCCGATGATTGTTGACTTT 420
||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 749 AGTTCTCCTTCTCTCTGTCTGGCATGCCCGCTCTCATCCGCTCCGATGATAGTTGACTTT 808
Query 421 GATATTGATTGTACAACTTTGCTTCCAGTCGCTGTGCCTGAGATGCCTGATGTATTAGCT 480
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 809 GACATTGATTGTACAACTTTGCTTCCAGTCTCTGTGCCTGAGATGCCTGATGTATTAGCT 868
Query 481 CCTCCACAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCATGC 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 869 CCTCCGCAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCGTGC 928
Query 541 TTTAACAAGTGTGGGGATCTTGTTTATATAGGTAATTCCAAAGGAGAAATACTTATAGTT 600
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 929 TTTAACAAGTGTGGGGATCTTGTTTATATCGGTAATTCCAAAGGAGAGATACTTATAGTT 988
Query 601 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTCCTGTGCCTGGCGCGGCACCTGTGAAA 660
||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||
Sbjct 989 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTTCTGCGTCTGGTGCGGCACCTGTGAAG 1048
Query 661 AACATAGTGTTTAGCAGGAATGGGCAGTATCTTCTCACGAATTCACATGATCGAACCATT 720
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1049 AACATTGTGTTTAGCAGGAATGGGCAGTATCTTCTCACAAATTCACATGATCGAACCATT 1108
Query 721 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAGATCCCTTGAGGACTTGGGA 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1109 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAAATCCCTTGAGGACCTGGGG 1168
Query 781 AAGAACATAGATGGGCTTGATGGTGTTGAGAAAATGAAGACTGTTGGATCAAAATGCTTA 840
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1169 AAGAACATAGATGGGCTTGATGGTATTGAGAAAATGAAGACAGTTGGATCAAAATGCTTA 1228
Query 841 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 1288
Query 901 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 1348
Query 961 ATATGGGATCGAGCGGGGCATCTTGTGAAAATTTTAGAAGGTCCTAAAGAAGCGTTGATT 1020
|||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1349 ATATGGGACCGAGCTGGGCATCTTGTGAAAATATTAGAAGGTCCAAAAGAAGCGTTGATT 1408
Query 1021 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTCTCTGTTTCCTTGGCGGGTCTAGTA 1080
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1409 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTTTCTGTTTCCTTGGCGGGTCTAGTA 1468
Query 1081 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCGGATTTCAAGGAG 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1469 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCTGATTTCAAGGAG 1528
Query 1141 CTTGAGGAGAACGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1200
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CTTGAGGAGAATGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1588
Query 1201 GAAAAGGT 1208
||||||||
Sbjct 1589 GAAAAGGT 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5