BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887529
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfa... 832 0.0
> AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfamily
A-4 of ERF/AP2 transcription factor family. The translated
product contains one AP2 domain. There are 17 members
in this subfamily including TINY. | chr1:23371327-23372073 FORWARD
LENGTH=747
Length=747
Score = 832 bits (450), Expect = 0.0
Identities = 525/562 (93%), Gaps = 2/562 (0%)
Strand=Plus/Plus
Query 49 TCTTCTTCTTCATCTGGTAATGATATTAATACTTTAATGGCCACTGACGCCGACATCTCT 108
|||||| || || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 187 TCTTCTACTGCAAGTGGTAATGATATTAATACTTTAATGGCCACTGACACCGACATCTCT 246
Query 109 CGCCGGAAAAAGCGTCCGGTTTACCGGGGAATTCGTTGCCGGAGTGGAAAATGGGTCTCC 168
|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 247 CGCCGGAAAAAGAATCCGGTTTATCGGGGAATTCGTTGTCGGAGTGGAAAATGGGTGTCT 306
Query 169 GAGATCCGAGAGCCTAAGAAGACTACACGTGTTTGGCTTGGAACTTATACGACGCCGGAG 228
|| |||||||||||||| |||||||||||||| |||||||| |||||| |||||||||||
Sbjct 307 GAAATCCGAGAGCCTAAAAAGACTACACGTGTCTGGCTTGGGACTTATCCGACGCCGGAG 366
Query 229 ATGGCTGCGGCCGCCTATGACGTGGCGGCTTTAGCTCTTAAAGGTGGAGACAC-CGTCTT 287
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 367 ATGGCTGCTGCCGCATATGACGTGGCGGCGTTAGCTCTTAAAGGTGGAGACACTC-TCTT 425
Query 288 GAACTTCCCGGATTCCGTGGGATCTTACCCCAGTCCCCTTTCCTCTTCCGCAGCTCATAT 347
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 GAACTTCCCGGATTCCCTGGGATCTTACCCCATTCCCCTTTCCTCTTCCGCAGCTCATAT 485
Query 348 CAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAGGGGTGCGGCTGCAGCGGCCGTGAAGGG 407
||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 486 CAGATGCGCTGCAGCTGCGGCTGCTGCGACTAGGGGTGCGGCTGGAGCGGCCGTGAAGGT 545
Query 408 AGGTGAAAAGAAGGAAGAGGAAGTTTGTGATACGGCGGGATCTTCAACTATGGGGTTTGT 467
|||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 546 AGGTCAAAAGAAGGAAGATAAAGTTTATGATACGGCGGAATCTTCAACTATGGGGTTTGT 605
Query 468 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGATGAAGAAGAGCTATTGAACATGCCTGGTTTGCTAGCGGATATGGCCAAAGGGATGAT 665
Query 528 GGTGGCTCCTCCGTGGATGGGATCTCCTCCGTCAGATGATTCGCCGGAAAATTCTGATGG 587
||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 666 GGTGGCTCCACCGTGGATGGGATCTCCACCGTCAGATGATTCGCCAGAGAATTCTGATGG 725
Query 588 AGAGAGCTTGTGGAGCTATTGA 609
||||||||||||||||||||||
Sbjct 726 AGAGAGCTTGTGGAGCTATTGA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5