BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887530
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51080.1 | Symbols: | RNase H family protein | chr5:2076880... 394 3e-109
AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834... 298 3e-80
> AT5G51080.1 | Symbols: | RNase H family protein | chr5:20768804-20770977
REVERSE LENGTH=1489
Length=1489
Score = 394 bits (213), Expect = 3e-109
Identities = 304/345 (88%), Gaps = 18/345 (5%)
Strand=Plus/Plus
Query 28 CGTGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAGTCCAGCTATGTCAGTTCCCAT 87
||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 318 CGTGCTCGTTCATACATTTCCTTGGTGCTGTTTAGGAAGTCCAGCTATGTCACTTCCCAC 377
Query 88 ATTCCATGGAATCGA-TGCTTCTATATGCCTTCAAAATAC-AGTTTAAAGCCTTCATGTG 145
||||||||||||| | |||||||||| ||| ||||| | |||||||||||| || |||
Sbjct 378 ATTCCATGGAATC-AGTGCTTCTATACATCTTTAAAAT-CTAGTTTAAAGCCTGCAAGTG 435
Query 146 TGACTGCACTTGGACTGTCTAGTGTTCATTGCTATT-CTACAAGATCAAAGACTGCCAAA 204
||| | | | | ||||||||||||||||||| || |||||||||||||||| |||
Sbjct 436 TGA--G----T-G--TATCTAGTGTTCATTGCTATTCCT-CAAGATCAAAGACTGCTAAA 485
Query 205 TCAAAGATTTC---AACCGCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 261
|||||||| || || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TCAAAGATGTCAAAAAGCTCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 545
Query 262 TTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGATTGTCAAGCT 321
|| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 546 TTTGTTGTTCGAAAGGGTGACATTGTTGGAATTTATAAGGATTTGATCGATTGTCAAGCT 605
Query 322 CAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAG 366
||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 606 CAAGTTGGATCTTCGGTTTATGATCCTCCAGTTAGCGTTTATAAG 650
> AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834-8523121
FORWARD LENGTH=1335
Length=1335
Score = 298 bits (161), Expect = 3e-80
Identities = 295/354 (83%), Gaps = 31/354 (9%)
Strand=Plus/Plus
Query 30 TGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAG-TCCAGCTATGTCAGTTCCCATA 88
|||||||||||||||| ||||||| ||||||||| || || ||||||||||||| | ||
Sbjct 18 TGCGCGTTCATACATTGCCTTGGGACTGCTTAAG-AGATCAAGCTATGTCAGTT--C-TA 73
Query 89 TTCCATGGAATCG-ATG---CTTCTATATGCCTTCAAAATACA-GTTTAAAGCCT-TCA- 141
|||| |||||| | ||| |||||||||||||||||||| || ||||||||||| | |
Sbjct 74 TTCCGTGGAAT-GAATGTTTCTTCTATATGCCTTCAAAAT-CATGTTTAAAGCCTGT-AG 130
Query 142 -TGTGTG-ACTGCACTTGGACTGTCTAGTGTTCATTGC-TATT-CTACAAGATCAAAGAC 197
|||| | | || ||||| | | ||||||||||| | |||| || ||||||||||| |
Sbjct 131 CTGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATT-CTTATTCCT-CAAGATCAAAGGC 188
Query 198 TGCCAAATCAAAGA--TT-TCAACCGCTGTTTCTGTTTCGGAT-TCGGATAAAGAGAAA- 252
|| |||||||||| || ||| | | | | |||||||| | | ||||||||| |||
Sbjct 189 TGTTAAATCAAAGATGTTATCATCAACCG--T-TGTTTCGGCTGT-GGATAAAGA-AAAG 243
Query 253 GACGCCTTTTTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGAT 312
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 244 GACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGATTTGAGTGAT 303
Query 313 TGTCAAGCTCAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAG 366
||||| |||||||||||||||||||| | ||||||||| ||||| |||||||||
Sbjct 304 TGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTATAAG 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5