BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887536
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 902 0.0
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 745 0.0
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:2... 204 1e-51
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 902 bits (488), Expect = 0.0
Identities = 726/836 (87%), Gaps = 36/836 (4%)
Strand=Plus/Plus
Query 70 AACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCTTGCTCCGACTTAGCGTGACT 129
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 115 AACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACT 174
Query 130 GATATACTGTTTAACGCTCAGAAGGTGTGCAGA-CAATGGCGACGCGTCTGTAAAGACCC 188
||||||||| |||||||| ||| |||||||| | |||||||| |||||||||||||
Sbjct 175 GATATACTGGATAACGCTCGGAAACTGTGCAGAGCG-TGGCGACGTATCTGTAAAGACCC 233
Query 189 TTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATCG-GTTCGATTTCGAG 246
||| ||||||| |||||||||||||||||||||||| || || || |||||||||||||
Sbjct 234 TTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATG-TA-CGAGTTCGATTTCGAG 291
Query 247 GGCATGTGTCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAGATCAACATTGGA 306
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 292 AGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAA 351
Query 307 CACTTCGTGAGCGATTCTCTCCTCAGCTACATCGCCGATAGATCAAGTAATCTGAAAAGT 366
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||
Sbjct 352 CACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGT 411
Query 367 CTTGGACTTTCAATCTATGAACAAATGACGAACGAAGGAGTTATGAAGGGAATTGCA-AA 425
|||||| ||||||||||||||| |||||||||| ||||||| ||||| ||||| | | ||
Sbjct 412 CTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCG-AGAA 470
Query 426 ATTTCCA-TGGCTTGAAACCCTCCAGGTCTTCCATTCATCGTTTAAACTGGATTTGAAGG 484
| ||||| || |||||||| ||| | ||||||| || ||| ||||||||||||| || |
Sbjct 471 ACTTCCACTG-CTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAG 529
Query 485 CTATAGGCCACGCTTGCCCACATCTAAAGACATTGAAGCTAAACTTCTCAGGCTGCCCAG 544
| |||||||| || |||||||| |||||||||||||||||||||| || ||||| | ||
Sbjct 530 CAATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCT-C--AG 586
Query 545 GGCATGAA--ATTTATCTTATAAGTCAGTTAGATTTCATTCCCCCTCCCGTCGAATGTGA 602
|| || || | | ||||| ||| ||| | |||||||| || ||||||||||
Sbjct 587 AGC-TGGCCCATG-A-C--ATAAGCCAGGTAGGCTACATTCCCCTTC---TCGAATGTGA 638
Query 603 TGATGATGCCCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATTTG 662
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 639 TGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATG-G 697
Query 663 G-AACGGACTGACCAACACTGGCTTGAATGTCATTCTCGACGGTTGTCCTCACCTGGAAG 721
| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 698 GTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGAAG 757
Query 722 A-C-C-TTGATGTGCGCAAGTGTTTCAACATTAAACTTGTCGGGAATCTTGAGAAGCGAT 778
| | | ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 758 AACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCGAT 817
Query 779 GTTTGGAGAGGATCAAAGAGTTGAGACG-CCCCGGTGACTCAACCGCCGATTACCCATAT 837
|| || |||||||||||||||||||||| |||| ||||||||| || |||||||| |||
Sbjct 818 GTATGAAGAGGATCAAAGAGTTGAGACGGCCCCA-TGACTCAACTGCGGATTACCCGTAT 876
Query 838 AATATCGGTGTGTCGACAACTG-TGCTTCAGATCATGATTAAATGTGGAT-TCATT 891
| |||| ||||||| | | || || ||||||| ||||||| || | ||| |||||
Sbjct 877 AGTATCAGTGTGTC-A-A--TGGTGGTTCAGATGATGATTACATCTCGATATCATT 928
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 745 bits (403), Expect = 0.0
Identities = 680/807 (84%), Gaps = 45/807 (6%)
Strand=Plus/Plus
Query 58 AAAGAGC-AACGAAACTGGTTGGATCTTCCGCCGGAGTTGACGACTTCGATCTTGCTCCG 116
||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||| ||
Sbjct 121 AAAGAGCGAA-GAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCG 179
Query 117 ACTTAGCGTGACTGATATACTGTTTAACGCTCAGAAGGTGTGCAGACAATGGCGACGCGT 176
|||||| |||||||||||||| ||||||||||||||||| | | | ||||||||| |
Sbjct 180 TCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCAT 239
Query 177 CTGTAAAGACCCTTCGATGTGGCAGAAAATCAACTTGCGAGACTGCCT-ATTCTATC-GG 234
|||||||||||||||||||||| |||||||||| |||||||||||| | | || |
Sbjct 240 TTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCA-TGTA-CAAC 297
Query 235 TTCGATTTCGAGGGCATGTGTCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG 294
|| ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAG 357
Query 295 ATCAACATTG--G-ACACTTCGTGAGCGATTCTCTCCTCAGCTACATCGCCGATAGATCA 351
|||||| ||| | ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 358 ATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAG---- 413
Query 352 AGTAATCTGAAAAGTCTTGGACTTTCAATCT-ATGAACAA--ATGACG-AACGAAGGAGT 407
| ||||||| ||||||||||||| ||| | | ||| ||||| ||| ||||||
Sbjct 414 -G-AATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAAAC-TAGGAGT 470
Query 408 TATGAAGGGAATTGCAAAATTTCCATGGCTTGAAACCCTCCAGGTCTTC-CATTCATCGT 466
| |||| | |||||||||| |||||| ||||||||||||| ||||| | || |||| ||
Sbjct 471 TGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTC-ACTCACTCAT-GT 528
Query 467 -TTAAACTGGATTTGAAGGCTATAGGCCACGCTTGCCCACATCTAAAGACATTGAAGCTA 525
| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 ATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCTA 588
Query 526 AACTTCTCAGGCTGCCCA-GG---G-CA-TGA-AATTTATCTTA-TAA-GTCAGTTAGA- 575
|||| || |||| ||| | || | || ||| || ||| | || || ||||||
Sbjct 589 AACTCCTTAGGCCGCCTATGGCCAGCCAGTGACAA-GTATGACAGCAACGT--GTTAGAC 645
Query 576 TTTCATTCCCCCTCCCGTCGAATGTGATGATGATGCCCTAGCAATCGCTGAAAGCATGCC 635
| || ||| | ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 646 GAT-ATGGGGCCT--C-TCGAATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCC 701
Query 636 CAAACTACGCCACCTCCAGCTTATTTGG--AACGGACTGACCAACACTGGCTTGAATGTC 693
|||||||| |||||||||||||| ||| ||| |||| |||||||| |||||||||| |
Sbjct 702 CAAACTACACCACCTCCAGCTTA--TGGCTAACAGACTAACCAACACAGGCTTGAATGCC 759
Query 694 ATTCTCGACGGTTGTCCTCACCTGGAAGACCTTGATGTGCGCAAGTGTTTCAACATTAAA 753
||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct 760 ATTCTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGC 819
Query 754 CTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTTGAGACGCCCCGGT 813
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 820 CTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGT 879
Query 814 GACTCAACCGCCGATTACCCATATAAT 840
||||||||||| |||||||||||||||
Sbjct 880 GACTCAACCGCAGATTACCCATATAAT 906
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 ATGACAACCTCCACTACGTTGCTGTCGTTGTTCATGAAAGAAGATGAAGA 50
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ATGACATCCTCCACTACGTTGCTGTCGTTGTTCATGAAAGAAGATGAAGA 68
> AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:2771044-2772252
REVERSE LENGTH=924
Length=924
Score = 204 bits (110), Expect = 1e-51
Identities = 177/209 (85%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 605 ATGATGCCCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATTTGGA 664
||||||| |||||||| ||||| | |||||| || | |||||||||||||||| | |
Sbjct 578 ATGATGCTCTAGCAATTGCTGACACCATGCCTGGTCTTCTCCACCTCCAGCTTATTAGTA 637
Query 665 ACGGACTGACCAACACTGGCTTGAATGTCATTCTCGACGGTTGTCCTCACCTGGAA-GAC 723
||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 638 ACGGACTAACCAACATTGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAATG-C 696
Query 724 CTTGATGTGCGCAAGTGTTTCAACATTAAACTTGTCGGGAATCTT-GAGAAG-CGATGTT 781
|||||| | ||| |||||||||||||||| ||| | ||| || || ||| || | |||||
Sbjct 697 CTTGATTTACGCCAGTGTTTCAACATTAACCTTTTTGGGGAT-TTGGAG-AGACAATGTT 754
Query 782 TGGAGAGGATCAAAGAGTTGAGACGCCCC 810
|||||||||||||||| || ||| |||||
Sbjct 755 TGGAGAGGATCAAAGATTTTAGATGCCCC 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5