BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887541

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxyla...   348    3e-95
  AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   320    7e-87


> AT5G51690.1 | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate 
synthase 12 | chr5:20997413-21001046 REVERSE LENGTH=3179
Length=3179

 Score =  348 bits (188),  Expect = 3e-95
 Identities = 224/242 (93%), Gaps = 0/242 (0%)
 Strand=Plus/Plus

Query  4    TACCTAAAACGACGCCGTCCTCCTCCCTCCAACCCGACGGAGTTACCGAGAACGTCGTCA  63
            ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |  |||
Sbjct  189  TACCTTAAACGACGCCGTCCTCCTCCCTCCGACCCGACGGACTTACCGAGAACTTTTTCA  248

Query  64   CGGACTAATCTCTTCTCTCGTGGAAACTCGATCGAACGAGTTCGAGCCTCCTCTCGAGCT  123
            |||||||||||||||||||| || |||||||||| ||||||||||| |||||| ||||| 
Sbjct  249  CGGACTAATCTCTTCTCTCGCGGGAACTCGATCGGACGAGTTCGAGTCTCCTCCCGAGCA  308

Query  124  GTTCCTCTGGCGAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAGACG  183
            |||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  309  GTTCCTGTAGCTAAACCTTCCGATTCGCCTTATTACATTGGGTTGGAGAGAGTCAAAACG  368

Query  184  GATCCGTACGATCGGATTAAGAACACGGATGGGATTATTCAGCTTGGATTAGCTGAGAGT  243
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  369  GATCCGTACGATCGGATTACGAACACGGATGGGATTATTCAGCTTGGATTAGCCGAGAGT  428

Query  244  AC  245
            ||
Sbjct  429  AC  430


> AT3G02530.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr3:528574-532582 REVERSE LENGTH=1965
Length=1965

 Score =  320 bits (173),  Expect = 7e-87
 Identities = 195/206 (95%), Gaps = 0/206 (0%)
 Strand=Plus/Plus

Query  247   ATAATCGCTCTTAGAAGAGCAAAGAGGAGAAACATGGAACGTTTGGTTTTGGCATGTGGT  306
             |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1062  ATAATCGCCCTTAGAAGGGCAAAGAGGAGGAACATGGAACGTTTGGTTTTGGCATGTGGT  1121

Query  307   GGAGAAGCTGTGAACTCCGTTGATGACTTGACCCCTGATTCTCTTTGTTGGGCTGGATTT  366
             ||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||| ||
Sbjct  1122  GGAGAAGCTGTGAACTCTGTCGATGACTTGACCCCTGATTGTCTTGGTTGGGCTGGACTT  1181

Query  367   GTATATGAGCACGTTCTTGGAAAGGAGAGGTACACATTTGTCGAGCAAGTGAAGAATCCT  426
             ||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||
Sbjct  1182  GTATATGAGCACGTTCTTGGAGAGGAGAAGTACACATTTGTTGAGCAAGTGAAGAATCCT  1241

Query  427   CATTCATGTACTATCCTCATAAAAGG  452
             ||||||||||||||||||||||||||
Sbjct  1242  CATTCATGTACTATCCTCATAAAAGG  1267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5