BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887549
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:27... 968 0.0
> AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:2743620-2745111
FORWARD LENGTH=918
Length=918
Score = 968 bits (524), Expect = 0.0
Identities = 596/628 (95%), Gaps = 16/628 (3%)
Strand=Plus/Plus
Query 34 TCAAAGAAGGACTTACATATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAG 90
||| |||| ||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 275 TCAGAGAAACACTTACATATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAG 334
Query 91 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 394
Query 151 ACAGGTCCATCAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 210
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 454
Query 211 GCCATACAAAAGAGGCCGACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 270
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 514
Query 271 CTTGAAATTGTCAAACCTCCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 330
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 515 CTTGAAATTGTCAAACCTCCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 574
Query 331 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 634
Query 391 TTGTCCTTGATAGAAGGGGAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAA 450
|||||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 635 TTGTCCTTGATAGAAGGGGA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAA 685
Query 451 GAGGAGAAAGCCATTAAAGAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCA 510
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 686 GAGGAGAAAGCCATTAAAGAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCG 745
Query 511 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGG- 569
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 746 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGC 805
Query 570 AAACCATAAACCCGACAGATTAATCATAAGCTTGTTCTCTGTCTATTACCCCCCAAGATT 629
|||||||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||
Sbjct 806 AAACCATAAACCCGACAGATTAATCATAAGTTTGTTCTCTGCCTACTATCCCA-AAGATT 864
Query 630 -TGTAACATGTAGAGTTTCACAACAATA 656
|||| ||||||||||||||||||||||
Sbjct 865 ATGTA-CATGTAGAGTTTCACAACAATA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5