BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887549 Length=657 Score E Sequences producing significant alignments: (Bits) Value AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:27... 968 0.0 > AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:2743620-2745111 FORWARD LENGTH=918 Length=918 Score = 968 bits (524), Expect = 0.0 Identities = 596/628 (95%), Gaps = 16/628 (3%) Strand=Plus/Plus Query 34 TCAAAGAAGGACTTACATATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAG 90 ||| |||| ||||||||||||||| |||||||||||| ||||||| ||||||||||| Sbjct 275 TCAGAGAAACACTTACATATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAG 334 Query 91 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 CCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTG 394 Query 151 ACAGGTCCATCAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 210 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 ACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACC 454 Query 211 GCCATACAAAAGAGGCCGACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 270 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 455 GCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAG 514 Query 271 CTTGAAATTGTCAAACCTCCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 330 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 515 CTTGAAATTGTCAAACCTCCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAA 574 Query 331 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 TCTGGTAATACCAACCTTTTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAAC 634 Query 391 TTGTCCTTGATAGAAGGGGAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAA 450 |||||||||||||||||||| | | | |||||||||||||||||||||||||||| Sbjct 635 TTGTCCTTGATAGAAGGGGA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAA 685 Query 451 GAGGAGAAAGCCATTAAAGAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCA 510 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 686 GAGGAGAAAGCCATTAAAGAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCG 745 Query 511 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGG- 569 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 746 GGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGC 805 Query 570 AAACCATAAACCCGACAGATTAATCATAAGCTTGTTCTCTGTCTATTACCCCCCAAGATT 629 |||||||||||||||||||||||||||||| |||||||||| ||| || ||| |||||| Sbjct 806 AAACCATAAACCCGACAGATTAATCATAAGTTTGTTCTCTGCCTACTATCCCA-AAGATT 864 Query 630 -TGTAACATGTAGAGTTTCACAACAATA 656 |||| |||||||||||||||||||||| Sbjct 865 ATGTA-CATGTAGAGTTTCACAACAATA 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31747980904 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5