BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887550
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1491 0.0
> AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:2745208-2747757 REVERSE LENGTH=2550
Length=2550
Score = 1491 bits (807), Expect = 0.0
Identities = 848/868 (98%), Gaps = 2/868 (0%)
Strand=Plus/Plus
Query 1 CGAGGAATGAGGCCTAACACTGTGACTATAATGAATCTCCTTCCTGTTTGTGCGCAGCTA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1684 CGAGGAATGAGGCCTAACACTGTGACTATCATGAATCTCCTTCCTGTTTGTGCGCAGCTA 1743
Query 61 GCCTCTCTGCATCTAGTAAGACAATGTCATGGATATATTATTAGAGGCAGACTTGGTGAT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1744 GCCTCTCTGCATCTAGTAAGACAATGTCATGGATATATTATTAGAGGCGGACTTGGTGAT 1803
Query 121 ATCCGCCTGAAGGGGACTCTACTAGATGTATATGCTAAATGTGGCAGCTTGAAGCATGCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 ATCCGCCTGAAGGGGACTCTACTAGATGTATATGCTAAATGTGGCAGCTTGAAGCATGCA 1863
Query 181 TATTCTGTCTTCCAGTCAGATGCTCGTAGAGATCTGGTTATGTTCACTGCTATGGTAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 TATTCTGTCTTCCAGTCAGATGCTCGTAGAGATCTGGTTATGTTCACTGCTATGGTAGCT 1923
Query 241 GGGTATGCTGTACATGGTAGGGGTAAGGAAGCACTTATGATCTTCTCTCATATGATTGAC 300
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1924 GGGTATGCTGTACATGGTAGGGGCAAGGAAGCACTTATGATCTACTCTCATATGACTGAA 1983
Query 301 TCAAACATAAAGCCCGATCATGTTTTCATAACTACTCTGTTGACTGCATGCTGTCATGC- 359
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1984 TCAAACATAAAGCCCGATCATGTTTTCATAACTACTATGTTGACTGCATGCTGTCATGCA 2043
Query 360 GGGATTAATACAGGATGGATTGCAAATATATGACTCAATAAGGGCAGTTCACGGTATGAA 419
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2044 GGG-TTAATACAGGATGGATTGCAAATATATGACTCAATAAGGACAGTTCACGGTATGAA 2102
Query 420 ACCTACAATGGAACAATATGCTTGTGCTGTAGATCTACTTGCTCGAGGGGGTCGACTTGA 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2103 ACCTACAATGGAACAATATGCTTGTGCTGTAGATCTAATTGCTCGAGGGGGTCGACTTGA 2162
Query 480 TGATGCATATTCTTTCATCACACAGATGCCAGTTGAACCCAATGCAAATATATGGGGAAC 539
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2163 TGATGCATATTCTTTTGTCACACAGATGCCAGTTGAACCTAATGCAAATATATGGGGAAC 2222
Query 540 ACTGTTAAGGGCGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 ACTGTTAAGGGCGTGTACAACCTATAATAGGATGGATCTGGGGCACTCAGTTGCAAATCA 2282
Query 600 TCTTTTGCAAGCTGAATCTGACGACACCGGAAACCACGTTCTCATATCGAATATGTATGC 659
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2283 TCTCTTGCAAGCTGAATCTGACGACACCGGAAACCACGTTCTAATATCGAATATGTATGC 2342
Query 660 TGCAGATGCTAAATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAAGGAAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 TGCAGATGCTAAATGGGAAGGCGTGATGGAGTTGAGAAACCTAATGAAGAAAAAGGAAAT 2402
Query 720 GAAAAAGCCAGCGGGATGTAGCTGGCTAGAAGTGGATGGGAAAAGGGATGTTTTTGTGTC 779
|||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 2403 GAAAAAGCCAGCGGGATGTAGCTGGCTAGAAGTGGATGGGCAAAGGAATGTCTTTGTGTC 2462
Query 780 TGGAGATTGTTCTCACCCTCGTAGAGACAGTATTTTTGACTTAGTCAATGCTTTATATCT 839
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2463 TGGAGATTGTTCTCACCCTCGTAGAGACAGTATTTTTGACTTAGTAAATGCTTTATATCT 2522
Query 840 TCAGATGAAAGAGCCTGTGGTGTTTTAA 867
||||||||||||||||||||||||||||
Sbjct 2523 TCAGATGAAAGAGCCTGTGGTGTTTTAA 2550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5