BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887553
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydr... 388 8e-108
> AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase
| chr5:17512476-17515495 FORWARD LENGTH=1821
Length=1821
Score = 388 bits (210), Expect = 8e-108
Identities = 218/222 (98%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGAGGCAGCGACAGAACTTAACTTATCACACAAGATGATGATCAGCCGAGCTTAT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 ATGGCAGAGGCAGCCACAGAACTTAACTTATCACACAAGATGATGATCAGCCGAGCTTAT 1444
Query 61 CATGATTCTCTATTCATGGCCAGGATATCTCCGATGGGTATGATATTCATCCCGTGCTAC 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1445 CATGATTCTCTCTTCATGGCCAGGATATCTCCGATGGGTATGATATTCATTCCGTGCTAC 1504
Query 121 AAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTA 1564
Query 181 AAAGTACTCTCCCTCGCTCTGGCTAAGCTCTCTTTAGACTGA 222
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1565 AAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5