BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887559
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro... 1243 0.0
AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2 ... 911 0.0
> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342
FORWARD LENGTH=1230
Length=1230
Score = 1243 bits (673), Expect = 0.0
Identities = 773/822 (94%), Gaps = 4/822 (0%)
Strand=Plus/Plus
Query 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGACT-TGTGTAA 59
|||||||||||||| ||||||||| || |||||||||||||||||||||| | |||||||
Sbjct 119 ATGTCGCAATCAACCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCTTCGA-TCTGTGTAA 177
Query 60 GAGAAATGAGATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTCTTGAAGACTGGAAC 119
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTTTGAAGACTGGAAC 237
Query 120 AACCATTGTCGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCGAC 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 AACCATTGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCAAC 297
Query 180 CGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAACAT 239
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 298 TGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATATGGCACCAAACAT 357
Query 240 ATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAGCTC 299
|||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 358 ATATTGCTGTGGTGCAGGAACTGCGGCTGATACTGAAGCAGTCACTGATATGGTCAGCTC 417
Query 300 ACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTTAAC 359
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| ||
Sbjct 418 ACAGCTGCGATTGCATCGTTACCAGACTGGTCGAGACTCTCGGGTCATTACTGCTTTGAC 477
Query 360 TCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCTTGG 419
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 478 CCTTCTCAAAAAACATCTTTTCAGCTACCAAGGTCATGTCTCTGCTGCTCTTGTACTCGG 537
Query 420 TGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTTTAACTGAAA 478
|||||||||||||||||| ||||||||||||||||| | ||||| |||||| |||||| |
Sbjct 538 TGGAGTTGATATCACTGGTCCACATCTGCATACTATAT-ACCCACACGGTTCAACTGACA 596
Query 479 CTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGCGA 538
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 597 CTCTTCCATTCGCCACAATGGGTTCGGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGCAA 656
Query 539 AGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATATGCT 598
|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 657 AGTATAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTGAATCCATATGCT 716
Query 599 CTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACAAAGG 658
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 CGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCGTGATCACAAAGG 776
Query 659 GGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGCAGCA 718
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 GGAACAAGGAATATCTCAGGAACTACATGGAACCAAACCCAAGAACCTATGTCAGCAGCA 836
Query 719 AAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGCTGG 778
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 837 AAGGCTATTCCTTCACCAAGAAAACTGAGGTTCTTCTCACCAAAATCACCCCATTGCTGG 896
Query 779 AGCGAGTCGAAATTACAGAAGTCGGTGAAGCTATGGAGGAAT 820
||||||||||||| |||||||| |||||||||||||||||||
Sbjct 897 AGCGAGTCGAAATCACAGAAGTTGGTGAAGCTATGGAGGAAT 938
> AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2
| chr5:16248286-16250756 REVERSE LENGTH=1199
Length=1199
Score = 911 bits (493), Expect = 0.0
Identities = 720/830 (87%), Gaps = 13/830 (2%)
Strand=Plus/Plus
Query 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGACT-TGTGTAA 59
|||||||| || | || ||| | || |||| ||||||||||||||||| | |||| ||
Sbjct 150 ATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGA-TCTGTGCAA 208
Query 60 GAGAAATGAGATGCTTACACAAAAGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACTGGAA 118
|| ||||| ||||| ||||| |||||||||||||| ||||| |||| | ||||||||||
Sbjct 209 AAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACTGGAA 267
Query 119 CAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCG 177
| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 268 CGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGCA 326
Query 178 ACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAAC 237
|| || ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 327 ACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAAC 386
Query 238 ATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAGC 297
|| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 387 ATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAGC 446
Query 298 TCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTTA 357
||||||||||| |||||| | ||| ||||||| || || ||||| || ||||||| ||
Sbjct 447 TCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATTG 506
Query 358 ACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCTT 417
|| || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 507 ACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCTT 566
Query 418 GGTGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTT-TAACTG 475
|||||||||||||| || || || ||||| || || || | ||||| |||||| | ||||
Sbjct 567 GGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATAT-ACCCACACGGTTCT-ACTG 624
Query 476 AAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGG 535
| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 625 ACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAAG 684
Query 536 CGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATAT 595
| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 685 CAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATAT 744
Query 596 GCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACAA 655
|||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||| |
Sbjct 745 GCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACTA 804
Query 656 AGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGCA 715
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 805 AGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGCA 864
Query 716 GCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGC 775
||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 865 GCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTAT 924
Query 776 TGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 822
||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 925 TGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5