BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887561

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44220.1 | Symbols:  | Protein of Unknown Function (DUF239) ...   217    1e-55


> AT2G44220.1 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr2:18283803-18285837 FORWARD LENGTH=1359
Length=1359

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 311/398 (78%), Gaps = 39/398 (10%)
 Strand=Plus/Plus

Query  53   CTTGCGTCT-ATGGAAA-AGAGCTCCCTGATCACTGGGAAATCGAAGTAC-AAAATCTTT  109
            ||||||| | ||||||| | || ||  | ||||| |||||||  ||||||    | | ||
Sbjct  59   CTTGCGT-TGATGGAAACA-AGTTCTTTTATCACCGGGAAATTAAAGTACTTCGA-CATT  115

Query  110  TGAAGCGGCTCAACAAACCTGC-CGTTAAATCCATTAAGAGTGAAGATGGAGACATAATA  168
            |||| ||| ||||||| ||||| | ||||||||||||||||||||||||||||  |||||
Sbjct  116  TGAAACGGTTCAACAAGCCTGCTC-TTAAATCCATTAAGAGTGAAGATGGAGATGTAATA  174

Query  169  GATTGTGTCCCAATTACTAGTCAACCAGCTTTGGATCATCCTCTGCTTAAAAACCATACA  228
            |||||||| || || |||| |||||||||||| ||||||| | | |||||||||||||| 
Sbjct  175  GATTGTGTTCCTATCACTAATCAACCAGCTTTTGATCATCATTTACTTAAAAACCATAC-  233

Query  229  ATCCAAGTCTGCTCTTCGTTTATGATGAGACCGAGTTT-TATCCCAAAAGGTAA-TCATT  286
              | |  ||  |         | ||||||||||||||| || |||    ||||| | |||
Sbjct  234  --C-A--TC--C---------A-GATGAGACCGAGTTTCTA-CCC----GGTAAGTGATT  271

Query  287  CTACAAACACCAAGAAAAATGCAAAGGCTATAACTCAGGTGTGGCACAAGAATGGAGAGT  346
            ||||  |||||||||   | ||||||||| |||||||||| |||||||||  ||||||||
Sbjct  272  CTACGTACACCAAGAGGGAGGCAAAGGCTGTAACTCAGGTTTGGCACAAGGCTGGAGAGT  331

Query  347  GTCCTGAAAACACTGTTGCTATCAGAAGAACAAACAAAGAAGAAATCTT-ACG-CTCAAA  404
            ||||  ||||||||||| | |||||||||||||| ||||||||  |||| | | | ||||
Sbjct  332  GTCCCAAAAACACTGTTCCAATCAGAAGAACAAAGAAAGAAGATCTCTTGA-GAC-CAAA  389

Query  405  ATCCATTGAG-AGTTTCAGCAAAAAGACTCATCAAAGC  441
            ||||||  || |||||  | | |||| |||||||||||
Sbjct  390  ATCCATC-AGGAGTTTTGGGAGAAAGTCTCATCAAAGC  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5