BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887571
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT2G09187.1 | Symbols: | transposable element gene | chr2:3639... 346 3e-94
> AT2G09187.1 | Symbols: | transposable element gene | chr2:3639603-3646073
REVERSE LENGTH=6471
Length=6471
Score = 346 bits (187), Expect = 3e-94
Identities = 595/782 (76%), Gaps = 68/782 (9%)
Strand=Plus/Plus
Query 99 ATGGTAC-TCGACAAATCTTTGTGAGGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCA 155
|||| || | || ||||| || ||||| | | ||||| | | ||||||| ||| ||||||
Sbjct 1 ATGGAACTTGGAAAAATC-TT-TGAGGGATGCAATCT-AGTCTTGTGAAAAGCCAACTCA 57
Query 156 ACACTTAGATTCCACCGAAGTAAATATA-TTTTCCGAGCGATGGTACTCGGAAAATCTCT 214
||||||||||| ||||||| | |||||| |||||| || | ||| ||| ||||| || |
Sbjct 58 ACACTTAGATTTCACCGAAATGAATATATTTTTCCAAGAGGTGGAACT-TGAAAAACTTT 116
Query 215 GTGAGGCAGAATCAAA--TT-T-TTCTGAAGAGCGAACTCAACACTTAGATTCCACC-GA 269
||||| | || ||| || | || |||| ||| ||||||||| ||||||| ||| |
Sbjct 117 TTGAGG--G-ATGAAATCTTGTCTTGTGAATAGCAAACTCAACATTTAGATTTAACCAAA 173
Query 270 AGTAAATATA-TTTTCCGAGCGATGGTACTCG-AAAAATCTCTGTG-AGGCA-G-AATCA 324
| | |||||| |||||| || | ||| ||| | ||||||| || || ||| | | ||||
Sbjct 174 AATGAATATATTTTTCCAAGAGGTGGAACTTGAAAAAATC-CT-TGAAGG-ATGAAATC- 229
Query 325 AATTTTTGTGAAGAGCGAACTCAA-CACTTAGATTCCACCGA-ACGATGGTACTCGAGAA 382
| | |||||||||||| || || | || ||| ||| | | ||| ||| || ||
Sbjct 230 TAGTCATGTGAAGAGCGAGCTAAATGAATT-TATTTTTTCGAGA-GGTGGAACTTGA-AA 286
Query 383 ATCT-ATGTGTGGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCA 439
|| | | || || | | ||||| | |||| |||||||||||||||||||||||||| |
Sbjct 287 ATATCCT-TGAGGGATGAAATCT-AGTTTTCTGAAGAGCGAACTCAACACTTAGATTTCG 344
Query 440 CCGAAGTAAATATATTTTCGGA-GCGATGGTACTCG-AAAAATCTCTGTGAGGCA-GAA- 495
| ||| | |||||||||| | | | || ||| | |||||||| | ||||| | |||
Sbjct 345 CTGAAATGAATATATTTTTTAAAGAGGTGAAACTTGGAAAAATCT-T-TGAGGGATGAAA 402
Query 496 TGTAATTTTTGTGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATATTTTCC 555
| || | || ||||||| ||||| ||||||||||||| ||||||| | ||||||||||||
Sbjct 403 TCTAGTCTT-GTGAAGAGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTTCC 461
Query 556 GAGCGATGGTACTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGA 612
|| | || ||| | |||||| ||| ||||| | ||| || | | || |||||||||||
Sbjct 462 AAGAGGTGAAACTTGGAAAAAT-TCT-TGAGGGATGAAATCTAGTCTT-GTGAAGAGCGA 518
Query 613 ACTCAACACTTAGATTCCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCG-AA 668
|||||||||||||||| ||||||| | | |||||||| ||||| | ||| ||| | ||
Sbjct 519 ACTCAACACTTAGATTTCACCGAAATGATTATATTTTTTTCCGAGAGGTGGAACTTGGAA 578
Query 669 AAATCTATGTGA-G-ACAGAA-TCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTC 725
||||| || ||| | | ||| ||| | | |||||||| |||||||||| |||||||||
Sbjct 579 AAATC-AT-TGACGGAT-GAAATCT-AGTCTTGTGAAGTGCGAACTCAATACTTAGATTT 634
Query 726 CACCGAAGTAAATATATTTT-CCGAGCGATGGTA-CTCG-AAAAATCTTTGTGAGGCA-G 781
||||||| | |||||||||| || || | || | || | ||||||| ||| | || | |
Sbjct 635 CACCGAAATGAATATATTTTTCCAAGA-AGGGCAACTTGGAAAAATCCTTGAG-GG-ATG 691
Query 782 AA-TCTAGTTTTTGTGAAGAGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTT 840
|| || ||| || ||||||||| ||||||| |||| |||| ||||||| | |||||||||
Sbjct 692 AAATCCAGTCTT-GTGAAGAGCGAACTCAACACTTCGATTTCACCGAAATGAATATATTT 750
Query 841 TC 842
||
Sbjct 751 TC 752
Score = 298 bits (161), Expect = 8e-80
Identities = 400/510 (78%), Gaps = 38/510 (7%)
Strand=Plus/Plus
Query 450 TATATTTTCGGAGCGATGGTACTCGAAAA-ATCTCTGTGAGGCA-G-AATGTAATTTTTG 506
||| ||||| ||| | ||| ||| ||||| ||| || ||||| | | ||| | | ||||
Sbjct 260 TATTTTTTC-GAGAGGTGGAACTTGAAAATATC-CT-TGAGGGATGAAATCT-AGTTTTC 315
Query 507 TGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATA-TTTTCCGAGCGATGGT 565
|||||| ||||||||||||||||||| | | ||| | |||||| |||| || | ||
Sbjct 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
Query 566 AC-TCGAAAAATCTCTGTGAGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACT 622
|| | ||||||||| | ||||| | | |||| | | ||||||||||||||| |||||||
Sbjct 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATC-TAGTCTTGTGAAGAGCGAACGCAACACT 432
Query 623 TAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTAC-TCGAAAAA-TCTATGTGA 680
|||||| ||||||| | |||||||||||| || | || || | |||||| ||| || |
Sbjct 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAATTCT-TGAGG 491
Query 681 GACAG-AATCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATA 739
|| | |||| || | ||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 492 GA-TGAAATC-TAGTCTTGTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATTA 549
Query 740 TATTTT---CCGAGCGATGGTACTCG-AAAAATCTTTGTGAGGCA-GAA-TCTAGTTTTT 793
|||||| ||||| | ||| ||| | ||||||| ||| || | ||| |||||| ||
Sbjct 550 TATTTTTTTCCGAGAGGTGGAACTTGGAAAAATCATTGAC-GG-ATGAAATCTAGTCTT- 606
Query 794 GTGAAGAGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTTT-CCGAGCGATGG 852
|||||| || ||||||||||||||||| ||||||| | |||||||||| || || | ||
Sbjct 607 GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AGGG 665
Query 853 TA-CTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAACA 908
| || | ||||||| || ||||| | ||| || | | || |||||||||||||||||||
Sbjct 666 CAACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAACA 722
Query 909 CTTAGATTCCACCGAAGTAAATATATTTTC 938
||| |||| ||||||| | |||||||||||
Sbjct 723 CTTCGATTTCACCGAAATGAATATATTTTC 752
Score = 259 bits (140), Expect = 4e-68
Identities = 503/667 (75%), Gaps = 69/667 (10%)
Strand=Plus/Plus
Query 398 AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATA-TTT 456
||||| | | ||||||| ||| ||||||||||||||||| ||||||| | |||||| |||
Sbjct 31 AATCT-AGTCTTGTGAAAAGCCAACTCAACACTTAGATTTCACCGAAATGAATATATTTT 89
Query 457 TCGGAGCGATGGTACTCGAAAAATCTCTGTGAGGCAGAATGTAA--TT-T-TTGTGAAGA 512
|| || | ||| ||| |||||| || | ||||| | ||| || || | ||||||| |
Sbjct 90 TCCAAGAGGTGGAACTTGAAAAA-CTTTTTGAGG--G-ATGAAATCTTGTCTTGTGAATA 145
Query 513 ACGAACTCAACACTTAGATTCCACC-GAAGTTAATATA-TTTTCCGAGCGATGGTACTCG 570
| ||||||||| ||||||| ||| || | |||||| |||||| || | ||| ||| |
Sbjct 146 GCAAACTCAACATTTAGATTTAACCAAAAATGAATATATTTTTCCAAGAGGTGGAACTTG 205
Query 571 -AAAAATCTCTGTG-AGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACTTAGA 626
||||||| || || ||| | | |||| | | |||||||||||| || || | | | |
Sbjct 206 AAAAAATC-CT-TGAAGG-ATGAAATC-TAGTCATGTGAAGAGCGAGCT-AA-A-TGA-A 257
Query 627 TTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCGAAAA-AT-CTATGTGAGACA 684
|| | || | |||| |||| | ||| ||| ||||| || || || | ||
Sbjct 258 TT---------T--AT-T-TTTT-CGAGAGGTGGAACTTGAAAATATCCT-TGAGGGA-T 301
Query 685 G-AATCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATT 743
| |||| || |||| |||||||||||||||||||||||||| | | ||| | ||||||||
Sbjct 302 GAAATC-TAGTTTTCTGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATT 360
Query 744 TTCCGA-GCGATGGTACTCG-AAAAATCTTTGTGAGGCA-GAA-TCTAGTTTTTGTGAAG 799
|| | | | || ||| | ||||||||||| | || | ||| |||||| || ||||||
Sbjct 361 TTTTAAAGAGGTGAAACTTGGAAAAATCTTTGAG-GG-ATGAAATCTAGTCTT-GTGAAG 417
Query 800 AGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCG- 858
||| ||| ||| ||||||||| ||||||| | |||||||||||| || | || ||| |
Sbjct 418 AGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGG 477
Query 859 AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATT 916
|||||| ||| ||||| | ||| || | | || |||||||||||||||||||||||||||
Sbjct 478 AAAAAT-TCT-TGAGGGATGAAATCTAGTCTT-GTGAAGAGCGAACTCAACACTTAGATT 534
Query 917 CCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCG-AAAAATCTCTGTGA-G-A 970
||||||| | | |||||||| ||||| | ||| ||| | ||||||| | ||| | |
Sbjct 535 TCACCGAAATGATTATATTTTTTTCCGAGAGGTGGAACTTGGAAAAATCA-T-TGACGGA 592
Query 971 CAGAA-TCTAATTTTTGTGAAGAGCAAACTCGACACTTAGATTCCACTGAACTGAATAT- 1028
||| |||| | || |||||| || ||||| | ||||||||| ||| ||| |||||||
Sbjct 593 T-GAAATCTAGTCTT-GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATA 650
Query 1029 TTTTTCC 1035
|||||||
Sbjct 651 TTTTTCC 657
Score = 206 bits (111), Expect = 5e-52
Identities = 275/350 (79%), Gaps = 27/350 (8%)
Strand=Plus/Plus
Query 32 AATCTAATTTTTGTGAAGAGCGAACTAAACACATAGATTCCACCGAAGTAAATATATTTT 91
||||| | | ||||||||||||||| ||||| |||||| ||||||| | ||||||||||
Sbjct 401 AATCT-AGTCTTGTGAAGAGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTT 459
Query 92 CCGAGCGATGGTAC-TCGACAAATCTTTGTGAGGCA-G-AATCTAATTTTTGTGAAGAGC 148
|| || | || || | || |||| | | ||||| | | ||||| | | |||||||||||
Sbjct 460 CCAAGAGGTGAAACTTGGAAAAAT-TCT-TGAGGGATGAAATCT-AGTCTTGTGAAGAGC 516
Query 149 GAACTCAACACTTAGATTCCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCGG 205
|||||||||||||||||| ||||||| | | |||||||| ||||| | ||| ||| ||
Sbjct 517 GAACTCAACACTTAGATTTCACCGAAATGATTATATTTTTTTCCGAGAGGTGGAACTTGG 576
Query 206 AAAA-TCTCTGTGA-GGCA-GAA-TCAAATTTTTCTGAAGAGCGAACTCAACACTTAGAT 261
|||| || | ||| || | ||| || | | || ||||| |||||||||| ||||||||
Sbjct 577 AAAAATCA-T-TGACGG-ATGAAATCTAGTCTTG-TGAAGTGCGAACTCAATACTTAGAT 632
Query 262 TCCACCGAAGTAAATATATTTT-CCGAGCGATGGTA-CTCG-AAAAATCTCTGTGAGGCA 318
| ||||||| | |||||||||| || || | || | || | ||||||| || ||||| |
Sbjct 633 TTCACCGAAATGAATATATTTTTCCAAGA-AGGGCAACTTGGAAAAATC-CT-TGAGGGA 689
Query 319 -GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAA 366
||| || | | || |||||||||||||||||||||| |||| |||||||
Sbjct 690 TGAAATCCAGTCTT-GTGAAGAGCGAACTCAACACTTCGATTTCACCGAA 738
Score = 193 bits (104), Expect = 4e-48
Identities = 386/512 (75%), Gaps = 60/512 (12%)
Strand=Plus/Plus
Query 180 TATATTTTCCGAGCGATGGTACTCGGAAAATCT-CTGTGAGGCA-G-AATCAAATTTTTC 236
||| |||| |||| | ||| ||| |||||| | || ||||| | | |||| | |||||
Sbjct 260 TAT-TTTTTCGAGAGGTGGAACT-TGAAAATATCCT-TGAGGGATGAAATC-TAGTTTTC 315
Query 237 TGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATA-TTTTCCGAGCGATGGT 295
|||||||||||||||||||||||||| | | ||| | |||||| |||| || | ||
Sbjct 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
Query 296 AC-TCGAAAAATCTCTGTGAGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACT 352
|| | ||||||||| | ||||| | | |||| | | ||||||||||||||| |||||||
Sbjct 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATC-TAGTCTTGTGAAGAGCGAACGCAACACT 432
Query 353 TAGATTCCACCG-AACG-----A---T------GGT---AC-TCGAGAAA-TCTATGTGT 392
|||||| ||||| || | | | ||| || | || ||| ||| || |
Sbjct 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAATTCT-TGAG- 490
Query 393 GGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAAT 450
|| | | ||||| | | ||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 491 GG-ATGAAATCT-AGTCTTGTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATT 548
Query 451 ATATTTT---CGGAGCGATGGTACTCG-AAAAATCTCTGTGA-GGCA-GAA-TGTAATTT 503
||||||| | ||| | ||| ||| | ||||||| | ||| || | ||| | || | |
Sbjct 549 ATATTTTTTTCCGAGAGGTGGAACTTGGAAAAATCA-T-TGACGG-ATGAAATCTAGTCT 605
Query 504 TTGTGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATATTTT-CCGAGCGAT 562
| |||||| ||||||||| ||||||||| ||||||| | |||||||||| || || |
Sbjct 606 T-GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AG 663
Query 563 GGTA-CTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAA 618
|| | || | ||||||| || ||||| | ||| || | | || |||||||||||||||||
Sbjct 664 GGCAACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAA 720
Query 619 CACTTAGATTCCACCGAAGTAAATATATTTTC 650
||||| |||| ||||||| | |||||||||||
Sbjct 721 CACTTCGATTTCACCGAAATGAATATATTTTC 752
Score = 182 bits (98), Expect = 8e-45
Identities = 382/510 (75%), Gaps = 56/510 (11%)
Strand=Plus/Plus
Query 84 TATATTTTCCGAGCGATGGTACTCGACAAATCT-TTGTGAGGCA-G-AATCTAATTTTTG 140
||| |||| |||| | ||| ||| || |||| | | ||||| | | ||||| | ||||
Sbjct 260 TAT-TTTTTCGAGAGGTGGAACTTGA-AAATATCCT-TGAGGGATGAAATCT-AGTTTTC 315
Query 141 TGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATTTTCCGA-GCGATGGT 199
|||||||||||||||||||||||||| | | ||| | |||||||||| | | | ||
Sbjct 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
Query 200 ACTCGGAAAA-TCTCTGTGAGGCA-GAA-TCAAATTTTTCTGAAGAGCGAACTCAACACT 256
||| |||||| ||| | ||||| | ||| || | | || |||||||||||| |||||||
Sbjct 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATCTAGTCTTG-TGAAGAGCGAACGCAACACT 432
Query 257 TAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCG-AAAAATCTCTGTGAG 315
|||||| ||||||| | |||||||||||| || | || ||| | |||||| ||| ||||
Sbjct 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAAT-TCT-TGAG 490
Query 316 GCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAC-GATGG 372
| | ||| || | | || ||||||||||||||||||||||||||| ||||||| |||
Sbjct 491 GGATGAAATCTAGTCTT-GTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATTA 549
Query 373 TACT-----C-GAGA-----AATCT---A----TG-T-GT-GGCA-GAA-TCTAATTTTT 409
|| | | |||| || || | | | | || | ||| |||| | ||
Sbjct 550 TATTTTTTTCCGAGAGGTGGAA-CTTGGAAAAATCATTGACGG-ATGAAATCTAGTCTT- 606
Query 410 GTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATTTT-CGGAGCGATGG 468
|||||| |||||||||| ||||||||| ||||||| | |||||||||| | || | ||
Sbjct 607 GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AGGG 665
Query 469 TA-CTCG-AAAAATCTCTGTGAGGCA-GAA-TGTAATTTTTGTGAAGAACGAACTCAACA 524
| || | ||||||| || ||||| | ||| | | | || ||||||| |||||||||||
Sbjct 666 CAACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAACA 722
Query 525 CTTAGATTCCACCGAAGTTAATATATTTTC 554
||| |||| ||||||| | |||||||||||
Sbjct 723 CTTCGATTTCACCGAAATGAATATATTTTC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5