BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887573

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45600.1 | Symbols: GAS41, TAF14B | YEATS family protein | c...   874    0.0  


> AT5G45600.1 | Symbols: GAS41, TAF14B | YEATS family protein | 
chr5:18487902-18489869 FORWARD LENGTH=1167
Length=1167

 Score =  874 bits (473),  Expect = 0.0
 Identities = 513/533 (96%), Gaps = 0/533 (0%)
 Strand=Plus/Plus

Query  1    TATCAATCACACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  347  TATCAATCTCACAAGTGGGCAGTATATGTTCGAGGGGCAACAAATGAAGATATCAGTGTT  406

Query  61   GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTTAATAACCCGACGAGAGTTATC  120
            |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct  407  GTAGTAAAGAAAGTTGTATTTCAGCTTCATTCTAGTTTCAATAGCCCGACTAGAGTTATC  466

Query  121  GAGGAGCCTCCATTTGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCGATGACA  180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  467  GAGGAGCCTCCATTCGAGGTATCGGAATCTGGTTGGGGAGAATTCGAGATTGCAATGACA  526

Query  181  TTGCATTTCCACAGCGATGTCTGCGATAAGCCATTGAGTTTATATCATCATTTAAAGTTA  240
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct  527  TTGCATTTCCACAGTGATGTCTGTGATAAGCCATTGAGTTTATATCATCATTTAAAGCTA  586

Query  241  TACCCGGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAC  300
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  587  TACCCTGAAGATGAATCAGGTCCTTTGACAATGAAGAAGCCTGTGGTTGTGGAATCTTAT  646

Query  301  GACGAGATTGTGTTTCCTGATCCTTCAGAAAGTTTTCTATCTAGGGTTCAGAATCATCCG  360
            ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  647  GACGAGATTGTCTTTCCTGATCCTTCAGAAAGTTTTTTAGCTAGGGTTCAGAATCATCCG  706

Query  361  GCTTTGACATTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTGGAG  420
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  707  GCTTTGACCTTTCCAAGATTACCCTCTGGTTACAACTTGCCTGCTCCTATGCAAGTCGAA  766

Query  421  GATACCGGCAAAAAGAAGAGAGGAGATACGAAAGATCATAGTTTGGGACAATGGTTCATG  480
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  767  GATACCGGGAAAAAGAAGAGAGGTGATACGAAAGATCATAGTTTGGGACAATGGTTCATG  826

Query  481  AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCGGCTGCTCGTCAACAGGT  533
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  827  AGTTTCTCTGAAGCAGATGAGTTATTACAGCTTGCAGCTGCTCGTCAACAGGT  879



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5