BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887585
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 987 0.0
> AT5G50360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48510.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:20505180-20506338 REVERSE LENGTH=1159
Length=1159
Score = 987 bits (534), Expect = 0.0
Identities = 667/727 (92%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 1 GGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATTCAAAG 60
||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 184 GGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATTCAAAG 243
Query 61 GAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGACAGAGA 120
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 GAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGACAGAGA 303
Query 121 AACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCTCTTCT 179
||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 304 AACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCTCTTCT 362
Query 180 CCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAGCTAGG 239
|| |||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||
Sbjct 363 TCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAGTTAGG 422
Query 240 TGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTATCAGAC 281
||||||| ||||||||| | | | | | | ||||||||||||||||||
Sbjct 423 TGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTATCAGAC 482
Query 282 GGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACGGAGAG 341
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 483 AGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACGGAGAG 542
Query 342 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT-TTAG 400
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |
Sbjct 543 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAATCTT-G 601
Query 401 AGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAACC 460
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 602 AGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAA-C 660
Query 461 GG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGAGTGTG 519
|| || ||| | || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 GGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGAGTGTG 720
Query 520 TGG-TTAGTGATGAAGGAGATGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 578
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 779
Query 579 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 839
Query 639 GAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGTCTCGG 698
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 840 GAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGCCTTGG 899
Query 699 ACGGTGA 705
|||||||
Sbjct 900 ACGGTGA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5