BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887587

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   701    0.0  


> AT5G50350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:20498476-20501680 
REVERSE LENGTH=2045
Length=2045

 Score =  701 bits (379),  Expect = 0.0
 Identities = 438/467 (94%), Gaps = 2/467 (0%)
 Strand=Plus/Plus

Query  12    TGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTG-TGGCTTCAGATAATAGACAAGGTC  70
             ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  801   TGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTGCT-GCTTCAGATAATAGACAAGGTC  859

Query  71    TTAGGAGGTCTTTTAGTCAAAATCCAGTCAAATACCATGATGGCTACTCTAGCCAGTCTT  130
             |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct  860   TTAGGAGGTCTTTTAGCCAGAATCCAATCAAATACCATGATGGCTACTCTAGCCAGTCTT  919

Query  131   CTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTCTACCAAGCATGGAACTGAGAGGA  190
             ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  920   CTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTCCAGCAAGCATGGAACTGAGAGGA  979

Query  191   TAATTCGAACAGTATATGCCCAAAATAAGGCAACACCAAAGAAGAGAGAATCTTTGGGGA  250
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  980   TAATTCGAACAGTATATGCCCAAAATAAGGCAACACCAAAGAAAAGAGAATCTTTGGGGA  1039

Query  251   ACTCCGAATATGGTTCCCAGCGGAAATCCCATGATGATCACCGTGCTGTCTCCACATTTA  310
             |||| |  |||||||||||||||||||| | ||||||| |||||| ||||||||||| ||
Sbjct  1040  ACTCTGGTTATGGTTCCCAGCGGAAATCTCTTGATGATAACCGTGGTGTCTCCACATCTA  1099

Query  311   CGAATGGTTATGCAACAAAATTGCAGGAGTCTGAGGAGCGCAAGCGAGATTTGCTGGCTG  370
             |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  1100  CGAAAGGTTATGCAACAAAATTGCAAGAGTCTGAGGAGCGCAAGCGAGAGTTGCTGGCTG  1159

Query  371   AGATTATGTTGGAGGAGGAGCGTGGTAGAGAGCTCTCTATGAACTTGAAAGAGTTACTTA  430
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||| |
Sbjct  1160  AGATTATGTTGGAGGAGCAGCGTGGTAGAGAGCTCTCTGTGAACTTGAAAGAAATACTCA  1219

Query  431   CTGCAAATCGTTCTGAAGCTGAGGAGAAGCCGTTGCGGACGCGAAAG  477
             ||| |||| | |||||||||||||| ||||| |||||||||||||||
Sbjct  1220  CTGAAAATAGCTCTGAAGCTGAGGAAAAGCCATTGCGGACGCGAAAG  1266



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5