BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887597
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of ... 948 0.0
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:245... 809 0.0
> AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of
the RPD3/HDA1 superfamily 18 | chr5:24571171-24574372 REVERSE
LENGTH=2175
Length=2175
Score = 948 bits (513), Expect = 0.0
Identities = 564/589 (96%), Gaps = 1/589 (0%)
Strand=Plus/Plus
Query 1 GGTGGGTCTTG-TTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGA 59
||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 177 GGTGGGTCTTGTTTATGACGAGACCATGTGCAAACACGACACACCTAACGGTAAGGTTGA 236
Query 60 CGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCAC 119
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 237 CGTAGAGTGTCCCGATCGTATCAGAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCAC 296
Query 120 CCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCA 179
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 TCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCA 356
Query 180 CACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAG 239
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 357 CACAAAGAAACATGTTAATTTAGTGAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAG 416
Query 240 AAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCGC 299
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 AAACAAGATTGCTTCACAGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGC 476
Query 300 ATATCTTGCAGCTGGATCTGTTGTAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 ATATCTTGCAGCTGGATCTGTTGTAAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGA 536
Query 360 TTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGG 419
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 537 TTGTGGCTTTGCTATTGTCAGGCCCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGG 596
Query 420 TTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGACCGGA 479
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct 597 TTTTTGTTTATTCAACAATGTTGCCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCTGA 656
Query 480 TCTAGATGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACACA 539
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 657 TCTAGATGTCAAGAAAATTCTGATTGTCGATTGGGATATCCATCACGGAAATGGTACACA 716
Query 540 GAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGG 588
||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 717 GAAGATGTTCTGGAAAGATTCTCGCGTACTAATATTCTCTGTTCATAGG 765
Score = 826 bits (447), Expect = 0.0
Identities = 713/834 (85%), Gaps = 48/834 (6%)
Strand=Plus/Plus
Query 618 TAGGTATGATCACGGAAGTTTCTATCCAGCGGGTGATGATGGAGA-TTATAACATGGTTG 676
|||| ||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 762 TAGGCATGATCACGGAAGTTTCTATCCATTTGGCGATGATGGAGACTT-TAACATGGTTG 820
Query 677 GGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAG 736
| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 821 GCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCCATGGGAGCAAGGAGGATGTGGAG 880
Query 737 ATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATC 796
||||||| |||||||||| |||| |||| |||||||| |||||||| ||||| || || |
Sbjct 881 ATGCAGACTATCTTGCCGTATGGAACCACATCTTGATCCCTGTGACCAAGGAATTCAAAC 940
Query 797 CCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTT 856
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 941 CAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTGGTGATCCGCTTGGGGGTT 1000
Query 857 GTTGTGTTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAAG 916
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1001 GTTGTGTTACCCCATATGGATATTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACATG 1060
Query 917 GAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCAC 976
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1061 GAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCTTGAGTCATTGGGAAAGTCTTCAC 1120
Query 977 TCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATG-TTCTTCTGGAGCATAC 1035
||||||||||||||||| |||||||||| ||| |||||| || ||| |||| | |||||
Sbjct 1121 TCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCA-TGGTTCATCTGAAACATAC 1179
Query 1036 CCATTAGAATCTACACGGCGTGTCGTA-AGAGCGG-A-GAATAGAGAGCTGAGGTACA-A 1091
|||||||||||||||||||||||| || | ||||| | | ||||| || | | ||| |
Sbjct 1180 CCATTAGAATCTACACGGCGTGTCATACA-AGCGGTACGCG-AGAGA-CT-ATGCACATA 1235
Query 1092 T-GTTTTTGCTGATTCTGATACATTGATGACGTCTAATGAGAATTTAAAGAACCTAAGTG 1150
| | || | | | ||| | | ||| |||||||||||||||||||||||| |||||
Sbjct 1236 TTGGCCTT-C--ACT-TGACGCGTCAATGGCGTCTAATGAGAATTTAAAGAACCCAAGTG 1291
Query 1151 CGGACAA-AAAC-CCTGCTGACGCTATCCTTCATGAAGTGGAAGAGTTAAAGTCTCTA-T 1207
| || || |||| || |||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 1292 CAGA-AAGAAACTCC-GCTGACGCCCTCCTTCGTGAAGTGGAAGAGTTAAAGTCTCTAAT 1349
Query 1208 GGGCTGCACGAGATGGAGAATTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGG 1267
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1350 GG-CTGCCCGAGATGGAGAACTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAATAAGG 1408
Query 1268 AGCTAGAA---A-CG---------T-G--GC-----TAATGTTGGTTGGCGCTCGAGAAG 1306
|||||||| | || | | || |||||||| || ||||||| || |
Sbjct 1409 AGCTAGAAGCGAACGAGAAGGAGCTAGAAGCGGGACTAATGTTGATTCGCGCTCGGGAGG 1468
Query 1307 ATG-AGTTTCGTGGTCTTCGTGCCAAAGTAGAGAGTTTG-ATGCGGGAGCGAGATGAGGC 1364
||| | | | ||||||||| ||| ||| ||||||||||| | || |||||||||||||||
Sbjct 1469 ATGTAATCT-GTGGTCTTCATGCAAAAATAGAGAGTTTGCA-GCAGGAGCGAGATGAGGC 1526
Query 1365 GGTAGCGAAAGCTGAGTGCCTAGATAAGGAACTCCAAGAAGAAAGGCCAAGAAG 1418
||||||||||||||| || ||||||||||||||||||| || ||| |||||||
Sbjct 1527 GGTAGCGAAAGCTGAACGCATAGATAAGGAACTCCAAGAGGATAGGGCAAGAAG 1580
> AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:24566783-24570991
REVERSE LENGTH=2423
Length=2423
Score = 809 bits (438), Expect = 0.0
Identities = 542/592 (92%), Gaps = 7/592 (1%)
Strand=Plus/Plus
Query 1 GGTGGGTCTT-GTTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGA 59
|||||||||| ||| |||||||||||||||||||||||||||||| |||| |||| | |
Sbjct 152 GGTGGGTCTTATTTACGACGAGACGATGTGCAAACACGACACACCTGACGGCGAGGATCA 211
Query 60 -CGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCA 118
| | ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct 212 CCCT-GAGTGTCCCGACCGCATCAGAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTT 270
Query 119 CCCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTC 178
| ||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||
Sbjct 271 CTCAAAGATGTGTGGTTCTTGGTAGTAGCAAAGCAGAAGATAAGCATCTCCAATTGGTTC 330
Query 179 ACACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGA 238
|||||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 331 ACACAAAGGACCATGTTAATTTAGTTAAGAGTATTAGCACAAAACAGAAAGATTATCGGA 390
Query 239 GAAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCG 298
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 391 GAAACAGGATTGCTTCACAGTTGAATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCG 450
Query 299 CATATCTTGCAGCTGGATCTGTTGTAAATG-TGGCAGAGAAAGTTGCAGAAGGAGAGTTA 357
|||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 451 CATATCTTGCAGCTGGTTCTGTTGTAAA-GTTGGCAGAAAAAGTTGCAGAAGGAGAGTTA 509
Query 358 GATTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATG 417
|||||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 510 GATTGTGGTTTTGCTATTGTCAGGCCCCCAGGGCACCATGCTGAGGCAGATGAAGCCATG 569
Query 418 GGTTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGACCG 477
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 570 GGTTTTTGTTTATTCAACAATGTTGCCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCG 629
Query 478 GATCTAGATGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACA 537
||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 630 GATCTAGGGGTCAAGAAAATTCTGATCGTTGATTGGGATGTCCATCACGGAAATGGTACC 689
Query 538 CAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATT-CTCTGTTCATAGG 588
||||||||||| |||||||||||||| ||||| || || |||||||||||||
Sbjct 690 CAGAAGATGTTTTGGAAAGATCCTCGTGTACT-ATTTTTCTCTGTTCATAGG 740
Score = 510 bits (276), Expect = 1e-143
Identities = 396/451 (88%), Gaps = 20/451 (4%)
Strand=Plus/Plus
Query 635 GTTTCTATCCAGCGGGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAG 694
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 754 GTTTCTATCCAGCGGGTGATGATGGCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAG 813
Query 695 GGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCG 754
||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 814 GGTTTAACATAAATGTTCCATGGGATCAAGGACGATGTGGAGATGCAGATTATCTTGCTG 873
Query 755 CATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCG-ATATTATTTTGCTT 813
|||||||||||||||||||||||||| | | ||| ||||| |||| || ||||||| |||
Sbjct 874 CATGGGACCATATCTTGATTCCTGTGGCGAGGGAATTTAA-CCCGGATGTTATTTTTCTT 932
Query 814 TCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTGTTACACCAGAT 873
||||||||||||||||||||||| ||||||||| |||||||||||||| || ||| ||
Sbjct 933 TCAGCTGGATTTGATGCAGCTATTAATGATCCGCTAGGGGGTTGTTGTGTGACCCCATAT 992
Query 874 GGATATTCAGTTATGTTGAAGAAGCT--------AA-TG--G-AGTTTGCACAAGGAAAG 921
|||||||||||||||||||||||| | || || | |||||||||||||||||
Sbjct 993 GGATATTCAGTTATGTTGAAGAAGGTTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAG 1052
Query 922 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCA-TTGGCAAAGTCTTCACTCGC 980
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||
Sbjct 1053 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGACTCAATTG-CAAAGTCTTCACTTGC 1111
Query 981 ATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGA-GCATACCCAT 1039
||||||||||||| |||||||||| ||| ||||||| | || | ||| ||||||||||
Sbjct 1112 ATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCAAGGACCTCC-GGAAGCATACCCAT 1170
Query 1040 TAGAATCTACACGGCGTGTCGTA-AGAGCGG 1069
| || || ||| |||||||| || | |||||
Sbjct 1171 TCGAGTCGACATGGCGTGTCATACA-AGCGG 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5