BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887599
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family p... 1114 0.0
> AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family
protein | chr5:23027892-23030565 REVERSE LENGTH=2085
Length=2085
Score = 1114 bits (603), Expect = 0.0
Identities = 727/786 (92%), Gaps = 11/786 (1%)
Strand=Plus/Plus
Query 1103 GTTTCTGCCACAGGGGTGATATTTGTTTGTTTTCACACAAGGGTACTCCACAATCTGCTT 1162
|||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 1250 GTTTCTGCTACAGGGGTGATAGTTGTTTGTTTTCGCATAAGGGTACTCCACAATCTGCTT 1309
Query 1163 CAGACACGCCGAGTGCAAATGTAACAGCCTCATCAACTAACATCACTGCAGCGTCGTTCT 1222
||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||
Sbjct 1310 CAGACACGCCGAGTGCAAATGTAACAGTCTCGTCTACTAAGATCACTGCAGCGTCTTTCT 1369
Query 1223 CTCCTCAGAAAACAAACAAACAATCCGTGAGAGAGGCAATAGCCAAATTACCGG-GAATC 1281
| |||||||||||||| ||||||||||||||||| || |||||||||||||||| | |||
Sbjct 1370 CGCCTCAGAAAACAAAAAAACAATCCGTGAGAGATGCCATAGCCAAATTACCGGCG-ATC 1428
Query 1282 CAAGCAAGAGTTTCAAGCTCTGTTGGGTTTTTGAAGCCCTTGAGTCAATCTAACCATA-G 1340
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |
Sbjct 1429 CAAGCAAGAGTTTCAAGCTCTGTTGCGTTTTTGAAGCCCTCAAGTCATTCTAACCA-ACG 1487
Query 1341 AAACCCATCTGATGCATTATCTCCAAAGATCAATGAACCTGTAACGCATCCCCAGGTTCT 1400
|||| |||||||||||| |||| ||||||||||||||| |||||||| ||| |||||||
Sbjct 1488 AAACTCATCTGATGCATCATCTTCAAAGATCAATGAACATGTAACGCCTCCACAGGTTCC 1547
Query 1401 TCCTTTGAGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAAC 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TCCTTTGAGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAAC 1607
Query 1461 CTTC-CAAGAGGATACGGTGAAAGTGTCTCCTGCGTCCAAGCGAAACACAGACAACTCTG 1519
| || ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 1608 C-TCACAAGAGGATACGGTGAAAGCGTCTTCTGCGTCCAAGCCAAACACAGACAACTCTG 1666
Query 1520 ATAATCAGACATTGAAGCAGTCACAACTGGGAAGCTCTCTTCCTCTGGTGCCTCCAAAAG 1579
||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||
Sbjct 1667 ATAGTCAGACATTGAAGCAGTCACAACAGGGAAGCTTTCTCCCTCTGGGGCCTCCAAAAG 1726
Query 1580 GAATCAGTTTCTTATCATTTGCATCAGAGGAACCAAAAACTCTGAATCGAGAGCCTCAAG 1639
|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1727 GAATAAGTTTCTTATCATTTGCATCAGAAGAACAAAAAACTCTGAATCGAGAGCCTCAAA 1786
Query 1640 AACCATCAAGTAGTAGAAATCTCAAGACAACTCCTAGCTCACACATTCAAAGTTCTCTAC 1699
||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1787 AACCAGCAAGTAGTAAAAATCTCAAGACTACGCCTAGCTCACACATTCAAAGTTCTCTAC 1846
Query 1700 TCTCAGCAATGAAACTAGCTGCAGAATTCGAATCCGCTAAAGTTGAAAGACGG-AACAAT 1758
||||||| |||||||| |||||||||||||||||||||||||||||| || || ||||||
Sbjct 1847 TCTCAGCCATGAAACTCGCTGCAGAATTCGAATCCGCTAAAGTTGAACGA-GGCAACAAT 1905
Query 1759 GATCCAACAGAAGCTGTAAATAAGAGCAATGTTACTACTGTTAACACGACAGTAACCAGA 1818
||||||||||||||||||||||||||||||| | ||||||| ||||| | |||||||||
Sbjct 1906 GATCCAACAGAAGCTGTAAATAAGAGCAATG-T--TACTGTTGACACGGCTGTAACCAGA 1962
Query 1819 AACTCAGGGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTTAGCCAAGGCAAA 1878
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1963 AACTCAGGGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTCAGCCACGGCAAA 2022
Query 1879 AACTGA 1884
||||||
Sbjct 2023 AACTGA 2028
Score = 713 bits (386), Expect = 0.0
Identities = 521/584 (89%), Gaps = 17/584 (3%)
Strand=Plus/Plus
Query 534 TGAAAGTGATAAAAAGGTAGAGGAGGTTCCTAAATCTGCTGAATCTAATGAAGTTAAAAG 593
||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 516 TGAAAGTGAGAAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAG 575
Query 594 TTCTGGATTTTTGGAAGCTTGTGATGAAACAGTTCAAAGAGAGATGGAATTGGAGAAACC 653
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 576 TTCTGGAGTTTTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACC 635
Query 654 TGTTGATAGTACTCCGGTTTTGGTAGATTCCGTGTCTCGGATAGTTGAAGATGATGATGT 713
|||||||| || |||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 636 TGTTGATAATAGTCCGGTTTTGGTAGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGT 695
Query 714 AGAAGAAGGAGAGATATCTGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAACC 773
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 696 AGAAGAAGGAGAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAAC 755
Query 774 AGTCGAAAGACATGAGGAGTGTCAGGTCTCACGAGATGGGATTGGTAACAGCCATCTCAC 833
|||||||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||
Sbjct 756 AGTCGAAAGACATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCATCTCAC 815
Query 834 AAGTCATGAGAGTTTTGGAAAAGAGCT--TGG-TGTTGAGAATCT-GACTTGTAT-TT-- 886
|||||| |||||||||| ||| | || ||| || |||| | | | | ||
Sbjct 816 TAGTCATAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAATCAAGCCAAGAAGATTGA 875
Query 887 T-AA-CTT-CT-TATCT--GCA--GATGGATCCTGGAACCTCCATTaaaaaaaGGTCTGC 938
| || ||| | || | ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 876 TCAAACTTTCAGTAACGAAGCAAAGATGGATCCTGGAACCTCCATCAAAAAAAGGTCTGC 935
Query 939 GCCTTCTAAGGACGCAAAAGCCAGAAAGAGGGCAAAAGCTAGGA-AGAAAAGAGCTAAAG 997
|||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 936 GCCTTCTAAGGATGCAAAAGCCAGAAAGAGGGCAAAAGCTAGGATA-AAAAGAGCTCAAG 994
Query 998 AGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGC 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGC 1054
Query 1058 CTATAAAGTATTGTCGACACTATCTCAAGGAACGGTGCCATGAG 1101
|||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1055 CTATCAAGTATTGTCGACACTATCTCAAGGGGCGGTGCCATGAG 1098
Score = 542 bits (293), Expect = 6e-153
Identities = 408/460 (89%), Gaps = 22/460 (5%)
Strand=Plus/Plus
Query 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCT-CTCGAATCGGACTTA 59
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCTGC-CGAATCGAAATTA 59
Query 60 TCGTTCTTTGCTTCATCACCTCTGCTCGAGTTTCGATCGGGAGCCTCGAGTTTCGCTTGC 119
||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| |||||
Sbjct 60 TCGCTCTTTGCTTTATCACTTTTGCTCGAGTTTCGATCGGGAGCCTCAAATTTCTCTTGC 119
Query 120 TACACCGGCCGTTCTTCACGAGCTGGTCTTAAGAACAGAAATTGCTCCAGTGTCTCCGGG 179
|||||||| ||||| || |||||||||||| ||||||||||||||| || |||||||||
Sbjct 120 CACACCGGCAGTTCTCCAGGAGCTGGTCTTACGAACAGAAATTGCTCAAGAGTCTCCGGG 179
Query 180 AGAAACTTGCAAACCACCGGAGAATCTATCAATGGTA-G-AATCAAAA-TCCAATGGAGT 236
|||||||||| |||| ||||||||| ||||||| || | |||||||| || ||||||||
Sbjct 180 AGAAACTTGCGAACCGCCGGAGAATTTATCAAT--TACGGAATCAAAACTC-AATGGAGT 236
Query 237 GTCTGTTGATTTAAGAGGTGAGAA--T--------T--CGCAGGAAAAGAGTTTGATGCT 284
||||| ||||| ||| |||||||| | | | ||||||||||||||||||||
Sbjct 237 GTCTGGTGATTCAAGTGGTGAGAAGGTGGAAACAATTTCACAGGAAAAGAGTTTGATGCT 296
Query 285 TGGAGATGTTTTTGATGGAATTGACTTGCAAGATGCATCTGTTGGTATTAGACACACAGA 344
||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 297 TGGAGATATTTGTGATGGAATTGACTTGCAAGATGCATCTGTTGTTAGTAGACACACAGA 356
Query 345 TTTTTTCGATAGCTTTGAGCTTATGATAAATGAAAATCCAGACTT-TGTTCCAGAAAGTT 403
||||||||||||||||||||||||||| ||||||| || ||| || ||||||||||||||
Sbjct 357 TTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGA-TTCTGTTCCAGAAAGTT 415
Query 404 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 443
||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5