BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887601

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembl...   802    0.0  


> AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembly 
protein 1;3 | chr5:23032449-23035661 FORWARD LENGTH=1656
Length=1656

 Score =  802 bits (434),  Expect = 0.0
 Identities = 450/458 (98%), Gaps = 0/458 (0%)
 Strand=Plus/Plus

Query  1     CCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGATGTTATTTCTGAGGAGATCACAGAG  60
             ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct  548   CCTAGTTTCTGGCTGACTGCTCTGAAAAATAATGATGTTATATCTGAAGAGATCACAGAG  607

Query  61    CGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGGTGCAAGATTGAAGAACCA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  608   CGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGGTGCAAGATTGAAGAACCA  667

Query  121   AAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTACTTCAAAAACACCCTATTA  180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  668   AAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTACTTCAAAAACACCCTATTA  727

Query  181   ACAAAGGCATATCATATGATTGATGAAGATGAGCCTCTGCTTGAGAAGGCTATTGGGACG  240
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  728   ACAAAGGCGTATCATATGATTGATGAAGATGAGCCTCTGCTTGAGAAGGCTATTGGGACA  787

Query  241   GAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATTCTTAAGAAGAAGCCTAAG  300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  788   GAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATTCTTAAGAAGAAGCCTAAG  847

Query  301   AAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGATTGTGAAAGCTTTTTCAAC  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  848   AAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGATTGTGAAAGCTTCTTCAAC  907

Query  361   TTCTTCAATCCTCCCCAAGTTCCCGATGATGATGAAGACATTGACGAAGAAAGAGCCGAG  420
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  908   TTCTTCAATCCTCCCCAAGTTCCTGATGATGATGAAGACATTGACGAAGAAAGAGCCGAG  967

Query  421   GAACTTCAGAATCTGATGGAACAAGATTATGACATTGG  458
             ||||||||||||||||||||||||||||||||||||||
Sbjct  968   GAACTTCAGAATCTGATGGAACAAGATTATGACATTGG  1005



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5