BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887602
Length=186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 255 7e-68
> AT5G56960.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:23038703-23041174 REVERSE LENGTH=1401
Length=1401
Score = 255 bits (138), Expect = 7e-68
Identities = 180/198 (91%), Gaps = 12/198 (6%)
Strand=Plus/Plus
Query 1 ATGATAAGACTTCTTGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTATCAATCGAA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1204 ATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTCAATCGAA 1263
Query 61 GCTCGAA--CT--C--GAGC-TA--GGGATACTTCGGTTGTTCTTGTG---AGCTTAAGG 108
||||||| || | |||| | |||||||||| ||||||||||| |||||||||
Sbjct 1264 GCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAGCTTAAGG 1323
Query 109 CTCAAGATTGAGGGTGAATGCGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTT 168
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTCAAGATTGAGGGTGAATGGGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTT 1383
Query 169 GCTGACTTGGCTCACTGA 186
||||||||||||||||||
Sbjct 1384 GCTGACTTGGCTCACTGA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8199120213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5