BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887613

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   263    5e-70


> AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:26080231-26083017 REVERSE LENGTH=966
Length=966

 Score =  263 bits (142),  Expect = 5e-70
 Identities = 160/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGGAGATATGGAGGCTCTCAATCCCGATTTGGATATGGCTGCCGCCGATGATGAT  60
            |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct  88   ATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGAT  147

Query  61   GCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGACGAAGCTGCT  120
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  148  GCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCT  207

Query  121  GCTCTACGTGAGATGCAGGTTAAGGTCGAGAAGGAAATGGCAGCCCAAG  169
            ||||| ||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct  208  GCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5