BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887617
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 745 0.0
> AT4G16230.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:9185298-9186779 FORWARD LENGTH=999
Length=999
Score = 745 bits (403), Expect = 0.0
Identities = 533/596 (89%), Gaps = 8/596 (1%)
Strand=Plus/Plus
Query 1 TTTGC-ACGAC-AGACGAGACAT-AATTCTTGGATTGGTGAATCCGAAGCGGCTAAATTA 57
||||| ||||| |||| |||||| | ||||||||| |||||||||||||| |||||||||
Sbjct 406 TTTGCAACGACAAGACAAGACATCATTTCTTGGATCGGTGAATCCGAAGCCGCTAAATTA 465
Query 58 TTCCGGTCAGCAATTTTCTCGGTTACGACCGGTTCAAACGATCTAATCAACAATTATTTC 117
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 466 TTCCGGTCAGCAATTTTCTCGGTTACGACAGGTTCTAATGATCTAATCAACAATTATTTC 525
Query 118 ACCCCGGTGGTGTCAACCGTTGAACGGAAAGTCAC-ATCTCCCGAAGTCTTCGTGGATAC 176
|| ||||| | |||||| || |||||||||| | | |||| |||||||| || |||||
Sbjct 526 ACTCCGGTCATATCAACCCTTCAACGGAAAGT-AGTAGCTCCAGAAGTCTTTGTTGATAC 584
Query 177 AATGATCTCAAGATTCCGATTACAACTCACCAGATTGTACCAATTTGGTGCGAGGAAAAT 236
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 585 AATGATCTCAAAATTTCGATTACAACTCACCAGATTGTACCAATTGGGTGCGAGGAAAAT 644
Query 237 CGTGGTGATTAATATTGGTCCCATTGGTTGTATACCGTTCGAGAGAGAAACTGATCCAAC 296
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
Sbjct 645 CGTGGTGATTAATATTGGTCCCATCGGTTGTATACCATTCGAGAGAGAGTCTGATCCAGC 704
Query 297 GGCTGGAGATGAA-TGTTCGGTTGAACCAAATGAAGT-GGCACAAATGTATAATATCAAG 354
|||||| || || |||| || ||||| ||||| || |||||||||||||||| | |||
Sbjct 705 CGCTGGAAAT-AACTGTTTGGCCGAACCTAATGAGGTTGGCACAAATGTATAATCTGAAG 763
Query 355 CTTAAAACCCTAGTAGAGGATTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTACGCT 414
|| ||||| || ||||| || ||||||||||||||||||||||||||||||||||| | |
Sbjct 764 CTGAAAACACTCGTAGAAGAGTTAAACAAGAATCTACAAGGTTCAAGATTCGTCTATGGT 823
Query 415 GATGTTTTTCGCATTGTTTATGATATCCTACAAAATTATTCATCTTACGGTTTTGAAAGT 474
|| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 824 GACGTTTTTCGCATTGTTGATGATATTATACAAAATTATTCATCTTACGGTTTTGAGAGT 883
Query 475 GAGAAGATTCCGTGTTGTTCATTACTTGGAAAAGTAGGTGGGCTTATTCCATGTGGTCCA 534
||||||||||| |||||||| ||| |||| |||||||||||||| |||||||||||||||
Sbjct 884 GAGAAGATTCCTTGTTGTTCGTTAGTTGGGAAAGTAGGTGGGCTGATTCCATGTGGTCCA 943
Query 535 TCTTCAAAAGTATGTATGGATCGTTCCAAATATGTGTTTTGGGATCCTTACCATCC 590
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 944 CCTTCAAAAGTATGTATGGACCGTTCCAAATATGTATTTTGGGATCCTTACCATCC 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5