BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887625
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25090.1 | Symbols: | Riboflavin synthase-like superfamily ... 656 0.0
> AT4G25090.1 | Symbols: | Riboflavin synthase-like superfamily
protein | chr4:12878775-12883599 REVERSE LENGTH=2705
Length=2705
Score = 656 bits (355), Expect = 0.0
Identities = 549/640 (86%), Gaps = 23/640 (4%)
Strand=Plus/Plus
Query 925 TTCCCGAGAATTATGATTGATGGTCCGTACGGCGCACCAGCACAAGACTACAAGAAATAC 984
||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1924 TTCCCCAAAATTATGATTGATGGTCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTAC 1983
Query 985 GAGGTGGTTCTGCTGATCGGCCTTGGGATTGGAGCCACCCCAATGATAAGTATTATTAAG 1044
|||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| |||
Sbjct 1984 GAGGTGGTCCTGCTGATAGGTCTTGGCATTGGAGCCACCCCGATGATCAGCATTATCAAG 2043
Query 1045 GACATAATCAATAATACGGAGACCAAAGAACTTGCTCAACTTGACCTAGCGAAGGTGGGA 1104
||||| || || |||||||||||||| |||| ||| | | || | | || ||||
Sbjct 2044 GACATTATTAACAATACGGAGACCAAGGAAC-AACTC-A---G-CCAAATGGAGAAGGGA 2097
Query 1105 TCACAACATGAGCCACAAAGTGAA-AAAGAAACTTTCAAGA-TGCGAAGGGCTTACTTCT 1162
|| | ||| |||| |||| || || |||||||||||||||| | ||||||||||||||||
Sbjct 2098 TCGCCACAAGAGCAACAAGGT-AATAAAGAAACTTTCAAGACT-CGAAGGGCTTACTTCT 2155
Query 1163 ATTGGGTAACAAGGGAGCAAGGCTCATATGATTGGTTCAAGAACATCATGAACGAGATTG 1222
| |||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||| |
Sbjct 2156 ACTGGGTAACAAAGGAGCAGGGCACATTTGATTGGTTCAAGAACATCATGAACGAGATCG 2215
Query 1223 CTGAGCGGGACAAAAACAAAGTCATAGAACTACACAA-CTATTGCACTAGCGTCTATGAA 1281
| || |||||||||| |||||||||||||||||||| | |||||||||| ||||| |||
Sbjct 2216 CAGAACGGGACAAAAGTAAAGTCATAGAACTACACAATC-ATTGCACTAGTGTCTACGAA 2274
Query 1282 GAAGGAGACGTTCGTTCAGCGTTCATACATATGCTTCAGTCTCTAAACCATGCCAAGAGT 1341
||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||| |
Sbjct 2275 GAAGGAGACGTTCGTTCCGCGCTCATACGGATGCTTCAGTCTCTTAATTATGCCAAGAAT 2334
Query 1342 GGTTTAGACATTGTCT-CTGGGACCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGG 1398
|||||||||||||| | ||||||| |||| | |||||| | ||| ||| ||||||||||
Sbjct 2335 GGTTTAGACATTGT-TGCTGGGAC-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGG 2391
Query 1399 GAAAACATTTACAAACAGATAGCCATGGATCACCCTGGCTCTAATGTTGT-GT-TT-TAT 1455
||||| | |||||||||||||||||||||||||||||| ||||||||| || || |||
Sbjct 2392 AAAAACGTCTACAAACAGATAGCCATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTAT 2451
Query 1456 TGTGGAGCCCCGGCATTGACAAAGGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAA 1514
|||||||| |||| |||||| |||||||||||| |||| ||||||||||||| |||| ||
Sbjct 2452 TGTGGAGCACCGGTATTGACGAAGGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAA 2510
Query 1515 GACAAGAACTAGATTCTCCTTCCACAAAGAAAACTTTTAA 1554
||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 2511 GACCAGTACTAGATTCTCTTTCCACAAAGAGAACTTCTAA 2550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5