BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887637

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20390.1 | Symbols:  | Glycosyl hydrolase superfamily protei...   438    3e-122


> AT5G20390.1 | Symbols:  | Glycosyl hydrolase superfamily protein 
| chr5:6892831-6894195 REVERSE LENGTH=1270
Length=1270

 Score =  438 bits (237),  Expect = 3e-122
 Identities = 340/389 (87%), Gaps = 9/389 (2%)
 Strand=Plus/Plus

Query  4    ACCAATATTCGGATCTTTGATATGAA-TATGGATGTCCTTAACACCTTCCGAGGTAA-C-  60
            ||||||||||||||||| || |  || || ||||||||||||| |||| ||||| || | 
Sbjct  262  ACCAATATTCGGATCTTCGACA-CAACTACGGATGTCCTTAACGCCTTTCGAGGGAATCG  320

Query  61   CATGATATTGGAATTATGGTAGGTGTGAAGAACCAAGACTTAGAGGCTCTTTTGGCCAAC  120
            ||  |||| ||| |||||||||  |||||||||||||||||||||||||||| || || |
Sbjct  321  CA--ATATCGGAGTTATGGTAGACGTGAAGAACCAAGACTTAGAGGCTCTTTCGGTCAGC  378

Query  121  GAAGACGCTGTTAACACATGGTTCGTGACCAACATTGAGCCTTACTTATCTGATGTCAAC  180
            ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  379  GAAGAAGCTGTTAACACCTGGTTCGTGACCAACATTGAGCCTTACTTAGCTGATGTCAAC  438

Query  181  ATCACGTTCATTACTGTTGAGAATGAAATCATCCCCGGAGAAATCGGCTCTTACGTGCTA  240
            |||||||||||| |||| | ||| ||| ||||||| || |||||||||||||| ||||||
Sbjct  439  ATCACGTTCATTGCTGTCGGGAACGAAGTCATCCCAGGGGAAATCGGCTCTTATGTGCTA  498

Query  241  CCCGTCATGCACTCTCTCACCAACGTTGTCAAGTCGAGGATTCTCCCAATCTTGATTAGT  300
            ||||||||| | |||||||||||| ||||||||||||||| |||||| |||||||| || 
Sbjct  499  CCCGTCATGAAATCTCTCACCAACATTGTCAAGTCGAGGAGTCTCCCGATCTTGATCAGC  558

Query  301  ACCACGGTGGAAAATGACCAACCTTGGCCAGTCGTATCCACCTTCTGCCGGAGATTTCAC  360
            ||||||||||  | ||||||||||||||||||| ||||||||||| ||||||||||||| 
Sbjct  559  ACCACGGTGGCTA-TGACCAACCTTGGCCAGTCATATCCACCTTCGGCCGGAGATTTCA-  616

Query  361  TCCC-CAAGCCCGAGAACAACTTATCCCG  388
            | || ||||| || |||||||||| ||||
Sbjct  617  TGCCTCAAGCACGTGAACAACTTACCCCG  645



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5