BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887643
Length=2868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 924 0.0
AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 558 9e-158
AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-L... 340 3e-92
AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 313 7e-84
AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-L... 281 2e-74
AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein ... 246 8e-64
AT3G03855.1 | Symbols: | pseudogene of disease resistance prot... 239 1e-61
AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 233 6e-60
> AT5G11250.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr5:3587978-3591960 REVERSE LENGTH=3570
Length=3570
Score = 924 bits (500), Expect = 0.0
Identities = 849/1013 (84%), Gaps = 41/1013 (4%)
Strand=Plus/Plus
Query 8 CTTCTT-GTTTCTTCCTTACCATTATTGCTGCTGCAATAGGATTCTTCTTGCTTTTTAGA 66
|||||| |||| |||||||||| | |||| ||||||||||| |||||| ||||| |||
Sbjct 5 CTTCTTCGTTT-TTCCTTACCACTGTTGCAGCTGCAATAGGCTTCTTCACCCTTTTGAGA 63
Query 67 AAACTCAGATTCCATCAAGAAGATAACAAAGAAAAGAA--C-tcttcttct-tcttcttc 122
|||||||||||||||| | ||||||||||||||||| | |||||| | ||| ||||
Sbjct 64 AAACTCAGATTCCATC---ATGATAACAAAGAAAAGAAGTCAACTTCTT-TATCTCCTTC 119
Query 123 ATCAACACCATCTTCTTTAG-CTCCTTCATCACCACCACCATCGTCTTTGGATCCCATCT 181
|||| | ||||||||||| | ||||||||||| || ||| | |||| | | |||||
Sbjct 120 ATCATCTCCATCTTCTTT-GTCTCCTTCATCAGTTCCTCCACCTTCTTCGTCTTGCATCT 178
Query 182 GGACACACCATGTGTTTCCAAGTTTTC-GAGGGGAAGATGTCCGTAGAGACTTTCTTAGT 240
|||||||||| || ||||| || ||| | |||||||||||||||||||||||||| |||
Sbjct 179 GGACACACCAAGTCTTTCCCAG-CTTCAGCGGGGAAGATGTCCGTAGAGACTTTCTCAGT 237
Query 241 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACACCATTCATTGATAATGAGATCGAG 300
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 238 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACTCCATTCGTTGATAATGAGATTAAA 297
Query 301 AGAGGACAATCCATCGGTCCCGAACT-CATTAGAGCAATTAGAGAATCCAAGATCGCAAT 359
|||||| ||||||||||||| || || | | | || ||||||| || ||||| |||||
Sbjct 298 AGAGGAGAATCCATCGGTCCTGAGCTTC-TGCGGGCTATTAGAGGGTCTAAGATAGCAAT 356
Query 360 TATCTTGCTCTCAAGAAACTACGCTTCTTCGAGTTGGTGTCTTGACGAATTGGCGGAGAT 419
|||||||||||| || ||||| |||||||| | ||||||||||||||| ||| ||||||
Sbjct 357 TATCTTGCTCTCTAGGAACTATGCTTCTTCAAAATGGTGTCTTGACGAACTGGTGGAGAT 416
Query 420 TATGAAGTGCAGGGAAGAAT-TGGGTCAAACAGTGTTGGCTGT-TTTCTATAAAGTGGAT 477
|||||| ||||| ||||| | ||| |||||| ||| |||| | ||| || |||||||||
Sbjct 417 TATGAAATGCAGAGAAGAGTATGG-TCAAACTGTGATGGCCATATTT-TACAAAGTGGAT 474
Query 478 CCATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCC 537
|| ||||||||||| || |||||||||||||| || |||||||| | |||||| ||||||
Sbjct 475 CCTTCTGATGTAAAAAATCTGACCGGAGATTTCGGGAAAGTCTTTAGAAAAACTTGTGCC 534
Query 538 GGTAAAACAAAAGA-GCACGTTGGGAGATGGAGACAAGCTTTGGCAAATGTCGCCACAAT 596
|||||| |||| || | || ||||||||||||||||||||| || ||| || |||||| |
Sbjct 535 GGTAAACCAAA-GAAGGACATTGGGAGATGGAGACAAGCTTGGGAAAAAGTGGCCACAGT 593
Query 597 CGCCGGTTACCATTCGACCAACTGGGATAATGAAGCGACCATGATTA-GAAATATCGCTA 655
|| ||||||||||| | ||||||||||||||||||| ||||||| | |||| ||||| |
Sbjct 594 AGCTGGTTACCATTCAATCAACTGGGATAATGAAGCGGCCATGATCAAGAAA-ATCGCCA 652
Query 656 CTGATATATCCAACA-AGTTGAATAATTCTGCCTCAT-CAAGTGATTTTGATGGGTTGGT 713
||||||| || |||| | |||| |||||| | || | || ||||||| || ||||| ||
Sbjct 653 CTGATATTTCGAACATA-TTGATTAATTCCAC-TCCTTCACGTGATTTCGACGGGTTAGT 710
Query 714 TGGGATGACTGCTCATTT-GAAGAAGATGGAACCATTGTTATGCCTAGGCTCAGATGAAG 772
|||||||| |||||||| ||| |||||| |||| ||||||||||||| | |||| ||||
Sbjct 711 TGGGATGAGAGCTCATTTAGAA-AAGATGAAACCGTTGTTATGCCTAGACACAGACGAAG 769
Query 773 TGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGGAAAGACGACCATCGCCAGAGTTG 832
| ||||| |||||||||||||||||| |||||||||| ||||| || || ||||||||||
Sbjct 770 TAAGGATAATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATTGCCAGAGTTG 829
Query 833 TATACAACAAACTCTCCAACAGTTTCCAACTGAGTGTCTTTATGGA-ATCTATCGAAGCA 891
|||||||| |||||||| |||||||||||||||||||||||||||| | |||| |||||
Sbjct 830 TATACAACCAACTCTCCCACAGTTTCCAACTGAGTGTCTTTATGGAGAA-TATCAAAGCA 888
Query 892 AAATATACAAGACCA--TGT-TCCGATGACTATAGTGCCAAGTTGCAGTTACAACAGCA- 947
|| ||||| |||||| || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 889 AACTATACCAGACCAACTGGCTCCGATGACTACAGTGCAAAGTTGCAATTACAACAA-AT 947
Query 948 GTTTATGTCTCAAATAACCAACCAGA-GTGATAT-GAAGATTTCTCATTTAGG 998
||||||||||||||||||||| || | | ||||| || |||| ||||||||||
Sbjct 948 GTTTATGTCTCAAATAACCAAGCAAAAG-GATATAGA-GATTCCTCATTTAGG 998
Score = 416 bits (225), Expect = 5e-115
Identities = 547/699 (78%), Gaps = 36/699 (5%)
Strand=Plus/Plus
Query 2173 ATGTCATACACTGAAAATCTCA--AGAACTTTCCTCATGCTT-TTGACATCATCACAGGC 2229
||||||||| ||| ||||| | ||| || ||||||| || ||||||||||||||
Sbjct 2890 ATGTCATACTTTGATAATCT-AGTGGAA-TTCCCTCATG-TTCTTGACATCATCACAAAT 2946
Query 2230 CTGCACATGACCAATACAGAAATACAAGAGGTTCCCCCA-TGGATCAAGA-AATTCTCTC 2287
||| || ||| | || |||||||||||||||||| ||| || ||||||| ||| ||||
Sbjct 2947 CTGGACTTGAGCGGTAAAGAAATACAAGAGGTTCCTCCACTG-ATCAAGAGAATA-TCTC 3004
Query 2288 GT-TTAACAGTACTCATACTCAAGGGATGCAAAAAGTTGGTATCACTCCCACAGATTCCA 2346
|| || | | ||||||||||||||| | || |||| |||||||||||||||||||||||
Sbjct 3005 GTCTTCAGAC-ACTCATACTCAAGGGGTACAGAAAGGTGGTATCACTCCCACAGATTCCA 3063
Query 2347 GATTCCATCTCTTACATAGATGCAAAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCC 2406
||||| | | || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 3064 GATTCTTTAAAATGGATTGATGCTGAAGATTGTGAGTCCTTGGAGAGACTAGATTGCTCC 3123
Query 2407 TTTCACAATCCAAAGATTTGGCTCAGATTTGCTAAGTGCTTCAAACTGAATCAAGAAGCC 2466
|||||||||||| ||||| ||| |||| ||||||||| ||||| |||||||||||
Sbjct 3124 TTTCACAATCCAGAGATTACTCTCTTCTTTGGTAAGTGCTTTAAACTTAATCAAGAAGCA 3183
Query 2467 AGAGACCTCATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAAGTG 2526
|||||||| |||||||||||||| |||| | | || |||||||| || ||||| |||
Sbjct 3184 AGAGACCTAATCATCCAGACACCGACTAA-ACAA--GCAGTCTTACCTGGTAGAGAGGTG 3240
Query 2527 CCTGCATACTTCACTCACCAATCTACTACTGGAGGTTCCTTGACAATCAAGCTGAACGAG 2586
||||||||||||||||||| | | | | || ||||| |||||||| ||| |||| |||
Sbjct 3241 CCTGCATACTTCACTCACCGAGCGAGTG--GG-GGTTCATTGACAATTAAGTTGAATGAG 3297
Query 2587 AAGCCTCTTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTTCATAAAGGTGAC 2646
| ||||||||||||||| ||| | | |||||||||||| ||||| |||| || ||||||
Sbjct 3298 AGGCCTCTTCCTACATCTATGAGATATAAGGCTTGCATCTTGCTAGTTCGTATTGGTGAC 3357
Query 2647 AATGAG-GCTCGTGAT-GATAAAAACTGGATGGATGAAAATTGCTA-CATTGTTAGTTGT 2703
||| | |||| |||| || | ||| ||| | ||| ||||| | |||||| | |
Sbjct 3358 TATG-GCGCTCATGATAGAGACAAA-TGGTTACATG----TTGCTTTCGGTGTTAGGTCT 3411
Query 2704 aaaaaaaGTAAG-CATTATT-TATATCCAGTTTTAGCAGAGCATGTGTACGTATTTGAAG 2761
| || | | | || ||| ||||| ||| ||| |||||||| ||||| ||| |||
Sbjct 3412 ACAACAT-TGGGGCAC-ATTATATATTCAGGCTTAACAGAGCATCTGTACACATTCGAAA 3469
Query 2762 TCGAAGCAGATG-TGACTTCCAGCGGGCTTGTCTTTGAGTTCAAGATC-AGGA-G-TAAG 2817
|||||| ||| | |||||||||||| ||||||||||||||||||| || || | | |||
Sbjct 3470 TCGAAG-AGAAGGTGACTTCCAGCGAGCTTGTCTTTGAGTTCAAGGTCGAGAACGGTAAC 3528
Query 2818 AATTGGAAGATAAAAGAATGTGGGGTATTCCAACTCTCG 2856
| |||||||| |||||| ||| || |||||| |||
Sbjct 3529 CACTGGAAGATTGGAGAATGCGGGTTACGCCAACTATCG 3567
> AT1G65850.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:24494678-24498542 FORWARD LENGTH=3269
Length=3269
Score = 558 bits (302), Expect = 9e-158
Identities = 661/832 (79%), Gaps = 34/832 (4%)
Strand=Plus/Plus
Query 181 TGGACACACCATGTGTTTCCAAGTTTTCGAGGGGAAGATGTCCGTAGAGACTTTCTTAGT 240
|||||||| || || |||||||| || || ||||||||||| ||||||| ||||| |||
Sbjct 192 TGGACACATCAAGTCTTTCCAAGCTTCCGTGGGGAAGATGTACGTAGAGGTTTTCTCAGT 251
Query 241 CACATTCAGATGGAGTTTCAAAGAATGGGAATCACACCATTCATTGATAATGAGATCGAG 300
|| ||||| | |||||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 252 CATATTCACAAGGAGTTTCAAAGAAAGGGAATTACACCATTCATTGATAATGAGATCAAG 311
Query 301 AGAGGACAATCCATCGGTCCCGAACTCATTAGA-GCAATTAGAGAATCCAAGATCGCAAT 359
|||||| ||||||| |||| ||| ||| || | || ||||||||||| |||||||| ||
Sbjct 312 AGAGGAGAATCCATTGGTCTTGAAATCA-TACATGCGATTAGAGAATCTAAGATCGCGAT 370
Query 360 TATCTTGCTCTCAAGAAACTACGCTTCTTCGA-GTTGGTGTCTTGACGAATTGGCGGAGA 418
| |||||||||| || ||||| |||||||| | ||||||||||||||| |||| |||||
Sbjct 371 TGTCTTGCTCTCTAGGAACTATGCTTCTTC-ATCTTGGTGTCTTGACGAGTTGGTGGAGA 429
Query 419 TTATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATAAAGTGGATC 478
| ||||| |||| |||||||| |||||| |||| | | ||||||||| ||||||||
Sbjct 430 TCATGAAATGCAAAGAAGAATTTAGTCAAATAGTGATCCCCATTTTCTATAGAGTGGATC 489
Query 479 CATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaa-aaCATGTGCC 537
|||| ||||| || ||||| || ||| ||||||| || ||||||||||| || ||||
Sbjct 490 CATCCGATGTTAAGAAGCTCACAGGAAATTTTGGGAATGTCTTCAAAAATAA-TTGTGTT 548
Query 538 GGTAAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCTTTGGCAAATGTCGCCACAATC 597
|||||||| || ||| | ||| ||||||||||||| ||||||| | | |||| |
Sbjct 549 GGTAAAACTAATGAGGTTATAAGGAAATGGAGACAAGCTCTGGCAAAAATGGGAACAACC 608
Query 598 GCCGGTTACCATTCGAC-CAACTGGGATAATGAAGCGACCATGATTAGAAAT-ATCGCTA 655
| |||||| |||| | |||||||||||||||||||||||||||| |||| || || |
Sbjct 609 ACTGGTTACGATTC-TCGCAACTGGGATAATGAAGCGACCATGATT-GAAAACATTGCCA 666
Query 656 CTGATATATCCAACAAGTTGAATAATTCTGC-CTCATCAAGTGATTTTGATGGGTTGGTT 714
||||||| || || | | ||||| ||||| | | ||||| |||||||||| || || ||
Sbjct 667 CTGATATTTCGAATATGCTGAATTATTCTACGC-CATCACGTGATTTTGACGGTTTAATT 725
Query 715 GGGATGACTGCTCATTTGAA-GAAGATGGAACC-ATTGTTATGCCTAGGCTCAGATGAAG 772
||||||| |||||| |||| | | |||||||| || |||||||||| ||| |||||||
Sbjct 726 GGGATGAGAGCTCATATGAAAGTA-ATGGAACCGAT-GTTATGCCTACACTCCGATGAAG 783
Query 773 TGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGG-AAAGACGACCATCGCCAGAGT- 830
||||||||||||| |||||||||||||||||||| || ||| || ||||| || ||| |
Sbjct 784 TGAGGATGATTGGAATTTGGGGTCCTTCTGGGATCGGGAAA-ACTACCATTGCTAGAATC 842
Query 831 TGTATACAACAAACTCTC-CAACAGTTTCCAACTGAGTGTCTTTATGGA-A-TCT-ATCG 886
| ||| | | || | | | ||||||| || |||||||||||||||| | | | | |
Sbjct 843 T-TATTTAGCCAATT-TAGCGACAGTTTTGAATTGAGTGTCTTTATGGAGAATGTTAAGG 900
Query 887 AAGCAAAA-TATACAAGACCA-TGT-TCC-GATGACTATAGTGCCAAGTTGCAGTTACA- 941
| | || ||||||||||| ||| | | ||||| || ||||| ||||| || |||||
Sbjct 901 A-GTTAATGTATACAAGACCGGTGTGTTCTGATGAATACAGTGCAAAGTTACACTTACAG 959
Query 942 ACAGCAGTTTATGTCTCAAATAACCAACCAGAGTGATAT-GAAGATTTCTCA 992
| | ||||| ||||| || || | |||||| | ||||| || |||| ||||
Sbjct 960 AAA-CAGTTCATGTCCCAGATTATCAACCACAAAGATATCGA-GATTCCTCA 1009
> AT3G25510.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946
Score = 340 bits (184), Expect = 3e-92
Identities = 438/554 (79%), Gaps = 43/554 (8%)
Strand=Plus/Plus
Query 2131 CCTTTATCAATCAAATCATGGTCTCGTCTCAATGAGGTGGATATGTCATACACT-GAAAA 2189
|||| ||||||||| || |||||| | |||| || | || ||||||||||| | |||||
Sbjct 3097 CCTTCATCAATCAAGTCTTGGTCTAGACTCACTGTGTTGCATATGTCATAC-TTCGAAAA 3155
Query 2190 TCTCAA-GAACTTTC-CTCATGCTT-TTGACATCATCACAG-GCCT-GCACATGACCAAT 2244
||||| ||| ||| | |||| || | |||||||| || | | || | | || | |
Sbjct 3156 ACTCAAGGAA--TTCTCGCATG-TTCTAGACATCATAAC-GTGGCTAG-A-AT-TCGGAG 3208
Query 2245 ACAGAAATACAAGAGGTTCCCCCATGGATC-AAGAAATTCTCTCGTTTAACA-GTACTCA 2302
| ||| |||||||| ||| | ||||||||| |||||| |||||||| | ||| | ||| |
Sbjct 3209 A-AGATATACAAGAAGTTGCTCCATGGATCAAAGAAA-TCTCTCGTCT-ACATGGACTTA 3265
Query 2303 TACTCAAGGGATGCAAAAAG-TTGGTATCACTCCCACAGATTCCAGATTCCATCTCT-TA 2360
|||| | ||||| |||| || |||||||||||||| ||||||| | | ||||| ||
Sbjct 3266 GACTCTACAAATGCAGAAAGCTT-TTATCACTCCCACAGCTTCCAGAAT-C-TCTCTCTA 3322
Query 2361 -CATAGATGCAAAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCCTTTC-ACAATCCA 2418
|||| |||| ||| |||||||||| |||||| ||||||||||| ||| | |||||||
Sbjct 3323 TCATAAATGCTGAAGGTTGTGAGTCCTTGGAGACACTAGATTGCT-CTTACAACAATCCC 3381
Query 2419 AAGA-T-TTGGCTCAGA-TTTGCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTC 2475
|| | || || | | |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 3382 TTGAGTCTT--CTTA-ATTTTGCTAAGTGCTTCAAACTGAATCAAGAAGCGAGAGACTTC 3438
Query 2476 ATCATCCAGACACCAACTAGTAGATC-TGCGGTCTTACCCGGCAG-AGAAGTGCCTGCAT 2533
|||||||||| ||| || |||| || ||||||||||||||| | ||||||||||||||
Sbjct 3439 ATCATCCAGATACCGACCAGTA-ATGATGCGGTCTTACCCGGT-GCAGAAGTGCCTGCAT 3496
Query 2534 ACTTCACTCACCAATCTACTACTGGAGGTTCCTTGACAATCAAGCTGAACGAGAAGCCTC 2593
|||||||||||| | |||||||||||| ||||||||| |||||| | || |||| ||||
Sbjct 3497 ACTTCACTCACCGAGCTACTACTGGAGCTTCCTTGACCATCAAGTTAAATGAGAGGCCTA 3556
Query 2594 TTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTTCATAAAGGTGACAATGA-G 2652
|| ||||||||||| | ||||||||||| || | ||| || | | | ||||||||| |
Sbjct 3557 TTTCTACATCCATGAGATTTAAGGCTTGTATCGTACTGATT-A-AGTG-TGACAATGATG 3613
Query 2653 --GCTCGTGATGAT 2664
||| ||||||||
Sbjct 3614 AAGCTGGTGATGAT 3627
> AT5G38340.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:15320507-15324061 FORWARD LENGTH=3180
Length=3180
Score = 313 bits (169), Expect = 7e-84
Identities = 630/844 (75%), Gaps = 66/844 (8%)
Strand=Plus/Plus
Query 191 ATGTGTTTCCAAGTTTTCGA-GGGGAAGATGTCCGTAGAGA-CTTTCTTAGTCACATTC- 247
|||| ||||| || |||| | || | |||||| || | | | ||||||| |||||| |
Sbjct 173 ATGTCTTTCCGAG-TTTCCACGGAGCAGATGTTCGCA-AAACCTTTCTTTCTCACATGCT 230
Query 248 AGATGGAGTTTCAAA-GAATGGGAATCACACCATTCATTGATAATGAGATCGAGAGAGGA 306
| | ||| |||||| ||| ||||||| ||||||||||||||||| ||| || ||||
Sbjct 231 A-AAAGAG-TTCAAACGAAAGGGAATCGTTCCATTCATTGATAATGATATC--GACAGGA 286
Query 307 -CAA-TCCATCGGTCCCGAACTC-ATTAGAGCAATTAGAGAATCCAAGATCGCAATTATC 363
||| || || ||||| || ||| | | ||| || |||| ||| ||||||||||| ||
Sbjct 287 GCAAGTCTATTGGTCCTGAGCTCGACGA-AGCTATCAGAGGATCAAAGATCGCAATCGTC 345
Query 364 TTGCTCTC-AAGAAACTACGCTTCTTCGAGT--TGGTGTCTTGACGAATTGGCGGAGATT 420
||||||| ||| ||||| |||||||| | | ||||| || |||| |||| ||||||
Sbjct 346 ATGCTCTCAAAG-AACTATGCTTCTTC-A-TCATGGTGCCTAAACGAGTTGGTGGAGATC 402
Query 421 ATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATAAAGTGGATCCA 480
| ||| || || |||| ||| |||||||||| || | |||||||| || || |||
Sbjct 403 ACGAAATGTAGAAAAGATTTGAATCAAACAGTGATGACCATTTTCTATGGCGTTGACCCA 462
Query 481 TCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaaCATGTGCCGGT 540
| |||||||| |||| ||| ||||| ||||| || |||||| ||| ||| |||| ||
Sbjct 463 ACAGATGTAAAGAAGCAGACAGGAGAGTTTGGGAAGGTCTTCGAAAGAACTTGTGAAAGT 522
Query 541 AAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCTTTGGCAAAT-GT-C-GCCACAATC 597
|||||| | ||||| ||| || ||||||| ||| ||||| || || | || ||||||
Sbjct 523 AAAACAGAGGAGCAGGTTAAGACATGGAGAGAAGTTTTGG---ATGGTGCGGCAACAATC 579
Query 598 GCCGGTTACCATTCGAC-CAACTGGGATAATGAAGCGACCATGATTAG-AAATATCGCTA 655
|| || | |||| | | || ||||||||||||||||| ||||||| | ||| || | |
Sbjct 580 GCTGGAGAGCATT-GGCACATCTGGGATAATGAAGCGAGCATGATT-GAAAAAATTTCCA 637
Query 656 CTGATATATCCAACAAGTTGAATAATTC-TGCCTCA---TCAAGTGATTTTGATGGGTTG 711
||| | || ||| | || ||| || | ||||| ||||| |||||||| | |||
Sbjct 638 TTGACGTTTCAAAC-A-TT-CTTAA-TCGTTCCTCACCCTCAAGAGATTTTGACGATTTG 693
Query 712 GTTGGGAT-GACTGCTCAT-TTGAAGAAGATGGAACCATTGTT-ATGCCTAGGCTC-AGA 767
||||||| || |||||| | ||| || ||| || | ||||| | ||||| ||| | |
Sbjct 694 ATTGGGATGGA-AGCTCATATGGAA-AAAATGAAATCGTTGTTGA-GCCTACACTCTA-A 749
Query 768 TGAAGTGAGGATGATTGGGATTTGGGGTCCTTCTGGGATTGGAAAGACGACCATCGCCAG 827
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 750 TGAAGTGAAGATGATTGGGATTTGGGGTCCTTCTGGGATTGGGAAGACCACCATTGCAAG 809
Query 828 AGT-TGTATACAACAAACTCTCCAAC-AGTTTCCAACTGAGTGTCTTTATGGA-ATCTAT 884
||| | |||| ||| | || | | ||| | |||||||||||||||| | |||
Sbjct 810 AGTCT-TATATAACCGTTTTTCTGGCGATTTTGGAT-TGAGTGTCTTTATGGACAA-TAT 866
Query 885 CGAAGCAAA--AT--ATACAAGACCA-TG--TTCCGATGACTATAGTGCCAAGTTGCAGT 937
||| | || ||||||||||| || ||| || || || ||||| |||||||| |
Sbjct 867 TAAAG-AGTTGATGCATACAAGACCAGTGGGTTCTGACGATTACAGTGCAAAGTTGCACT 925
Query 938 TACA-ACAGCAGTTTATGTCTCAA-ATAACCAACCAGA-GTGATATGAAGATTTCTCATT 994
|||| | | ||||| ||||| | | ||||||||||| | | || | |||||| ||||||
Sbjct 926 TACAGA-ACCAGTTAATGTC-CGAGATAACCAACCATAAG-GAGACCAAGATTACTCATT 982
Query 995 TAGG 998
||||
Sbjct 983 TAGG 986
> AT3G44630.3 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16195984-16200595 FORWARD LENGTH=4031
Length=4031
Score = 281 bits (152), Expect = 2e-74
Identities = 402/520 (77%), Gaps = 28/520 (5%)
Strand=Plus/Plus
Query 2129 TTCCTTTATCAATCAAATCATGGTCTCGTCTCAATG-AGGTGGATATGTCATACACTGAA 2187
||||||| || |||| || ||||||||||| || | | || ||||||||| ||||
Sbjct 2942 TTCCTTTGTCGATCACGTCGTGGTCTCGTCTTGCTGTATAT-GAAATGTCATACTTTGAA 3000
Query 2188 AATCTCAA-GAACTTTCCTCATGCTTTTGACATCATCACAGGCCTGCACATGACCAA-T- 2244
| || || ||| || || |||||| ||||||||||||| | ||| | || || |
Sbjct 3001 AGCCTTAAGGAA-TTCCCGCATGCTCTTGACATCATCACCGACCTACTTTTG-GTAAGTG 3058
Query 2245 ACAGAAATACAAGAGGTTCCCCCATGGATCAAGA-AATTCTCTCGTTTAACAGTACTC-- 2301
| ||| |||||||| ||||| |||||| |||||| || | |||||||| || || |||
Sbjct 3059 A-AGATATACAAGAAGTTCCTCCATGGGTCAAGAGAA-TGTCTCGTTT-AC-GTGCTCTT 3114
Query 2302 ATACTCAAGGGA-TGCAAAAAGT-TGGTATCACTCCCACAGA-TTCCAGATTCCATCT-C 2357
| |||||| | ||| || ||| |||||||||||||||| | ||||||||||| | |
Sbjct 3115 AGACTCAA-CAACTGC-AATAGTCTGGTATCACTCCCACA-ACTTCCAGATTCCCT-TGA 3170
Query 2358 TTACATAGATGCA-AAAGATTGTGAGTCCCTGGAGAGACTAGATTGCTCCTTTCACAATC 2416
||||||| ||||| | | ||||| ||||||| |||||||| ||||| | |||| ||||||
Sbjct 3171 TTACATATATGCAGATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTTGCTTTAACAATC 3229
Query 2417 CAAAGATTTGGCTCAGATTT-GCTAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTC 2475
|| |||| | ||| |||| | || ||||||||||||||||||||||||||||| |||
Sbjct 3230 CAGAGATCCGTCTC-TATTTCCCCAAATGCTTCAAACTGAATCAAGAAGCCAGAGATCTC 3288
Query 2476 ATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAAGTGCCTGCATAC 2535
||||| || ||| ||||| ||| || |||| | ||||| | | | |||||||||| | |
Sbjct 3289 ATCATGCACACATCAACTCGTAAATATGCGATGTTACCAAGTATACAAGTGCCTGCCTGC 3348
Query 2536 TTCACTCACCAATCTACTACTGGAGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCT 2594
|||| ||||| | ||||| |||| || || ||||| ||||||| |||| ||| | ||||
Sbjct 3349 TTCAATCACCGAGCTACTTCTGG-GGATTACTTGAAAATCAAGTTGAAGGAGTCGTCTCT 3407
Query 2595 TCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTT 2634
||||||| || || | ||||||||||| || |||| |||
Sbjct 3408 TCCTACAACCTTGAGATTTAAGGCTTGTATCATGCTTGTT 3447
> AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein
(TIR-NBS-LRR class) family | chr3:16090564-16096359 REVERSE
LENGTH=4038
Length=4038
Score = 246 bits (133), Expect = 8e-64
Identities = 365/472 (77%), Gaps = 35/472 (7%)
Strand=Plus/Plus
Query 2176 TCATACACTGAAAATCTCA-AGAACTTTCCTCATGCTTTTGACATCATCAC-AGGCCTGC 2233
|||||| ||||| |||| ||| || || |||||||||||||||||||| | | ||||
Sbjct 2930 TCATACTTTGAAAGCCTCATGGAA-TTCCCGCATGCTTTTGACATCATCACGAAG-CTGC 2987
Query 2234 ACATGACCAATACAGAAATACAAGAGGTTCCCCCATGGATCAAGA-AATTCTCTCGTTTA 2292
| ||| | | | ||| |||||||| ||||| |||||| |||||| || | ||||||||
Sbjct 2988 ATTTGAGC-A-A-AGATATACAAGAAGTTCCTCCATGGGTCAAGAGAA-TGTCTCGTTT- 3042
Query 2293 ACAGT-ACTCATA--CTCAAGGGA-TGCAAAAAGT-TGGTATCACTCCCACAGA-TTCCA 2346
|| || | || || ||||| | ||||| || | ||||||||||||| || | || ||
Sbjct 3043 AC-GTGA-TCTTAGTCTCAA-CAACTGCAATAA-TCTGGTATCACTCCCCCA-ACTTTCA 3097
Query 2347 GATTCCATCT-CTTACATAGATGCA-AAAGATTGTGAGTCCCTGGAGAGACTAGATTGCT 2404
|||||| | | ||||||| ||||| | | ||||| ||||||| |||||||| ||||| |
Sbjct 3098 GATTCCCT-TGATTACATATATGCAGATA-ATTGTAAGTCCCTCGAGAGACTGGATTGTT 3155
Query 2405 CCTTTCACAATCCAAAGATTTGGCTCAGATTT-GCTAAGTGCTTCAAACTGAATCAAGAA 2463
|||| |||||||| |||| | ||| |||| | || |||||||||||||||||||||
Sbjct 3156 GCTTTAACAATCCAGAGATCCGTCTC-TATTTCCCCAAATGCTTCAAACTGAATCAAGAA 3214
Query 2464 GCCAGAGACCTCATCATCCAGACACCAACTAGTAGATCTGCGGTCTTACCCGGCAGAGAA 2523
|||||||| |||||||| || ||| || ||||| ||| | || || || | | ||
Sbjct 3215 GCCAGAGATCTCATCATGCA--CACTTG-TA-TAGAT--GCGATGTTTCCAGGTACACAA 3268
Query 2524 GTGCCTGCATACTTCACTCACCAATCTACTACTGGAGG-TTCCTTGACAATCAAGCTGAA 2582
|||||||| | ||||| ||| | | ||||| |||| || |||||||| ||||||| ||||
Sbjct 3269 GTGCCTGCCTGCTTCATTCATCGAGCTACTTCTGG-GGATTCCTTGAAAATCAAGTTGAA 3327
Query 2583 CGAGAAGCCTCTTCCTACATCCATGCGGTTTAAGGCTTGCATTTTGCTGGTT 2634
||| ||||||||||||| || || | ||||||||||| || |||| |||
Sbjct 3328 GGAGTCGCCTCTTCCTACAACCTTGAGATTTAAGGCTTGTATCATGCTTGTT 3379
> AT3G03855.1 | Symbols: | pseudogene of disease resistance protein
| chr3:986948-990738 FORWARD LENGTH=3791
Length=3791
Score = 239 bits (129), Expect = 1e-61
Identities = 349/453 (77%), Gaps = 24/453 (5%)
Strand=Plus/Plus
Query 181 TGGACACACCATGTGTTTCCAAGTTTTCGA-GGGGAAGATGTCCGTAGAGA-C-TTTCTT 237
|||| |||| |||| || || || ||| | || | ||||||||| | | | | |||||
Sbjct 141 TGGATACACGATGTCTTCCCGAG-CTTCCACGGTGCAGATGTCCGCA-A-ATCGTTTCTG 197
Query 238 AGTCACATTCAGATGGAGTTTCA-AAG-AATGGGAATCACAC-CATTCATTGATAATGAG 294
||||||| || || |||| ||| ||| || || ||| || |||||||||||||||
Sbjct 198 AGTCACACTCTGAAGGAG-CTCAGAAGCAA-AGGTATC-GACTTATTCATTGATAATGAT 254
Query 295 ATCGAGAGAGGACAATCCATCGGTCCC-GAACTCATTAGAGCAATTAGA-GAATCCAAGA 352
||| ||||||| ||| ||||| ||| || |||| | ||| | | | | ||| | |
Sbjct 255 ATCTTGAGAGGAGAATTTATCGG-CCCTGAGCTCAAAAAAGCGA-TCCATGGATCGAGGC 312
Query 353 TCGCAATTATCTTGCTCTC-AAGAA-ACTACGCTTCTTCG-AGTTGGTGTCTTGACGAAT 409
|||| ||| |||||||||| || || | |||||||||||| | ||||||||||||||||
Sbjct 313 TCGCGATTGTCTTGCTCTCGAA-AAGA-TACGCTTCTTCGTCG-TGGTGTCTTGACGAAT 369
Query 410 TGGCGGAGATTATGAAGTGCAGGGAAGAATTGGGTCAAACAGTGTTGGCTGTTTTCTATA 469
||||||||||||||||||||| ||||| || |||||||||||| |||| |||||||
Sbjct 370 TGGCGGAGATTATGAAGTGCAAGGAAGCTTTTGGTCAAACAGTGATGGCCATTTTCTACG 429
Query 470 AAGTGGATCCATCTGATGTAAATAAGCTGACCGGAGATTTTGGAAAAGTCTTCaaaaaaa 529
||||||||||| |||||||| | |||| |||||||| |||||| ||||||||| | |||
Sbjct 430 AAGTGGATCCAACTGATGTAGAGAAGCAGACCGGAGGTTTTGGGGAAGTCTTCACAGAAA 489
Query 530 CATGTGCCGGTAAAACAAAAGAGCACGTTGGGAGATGGAGACAAGCT-TTGGCAAATGTC 588
| |||| ||||||||| ||| || ||| || |||||| |||||| ||| |||| ||
Sbjct 490 CTTGTGAGGGTAAAACAGCTGAGGACATTGAGAAATGGAGTCAAGCTCTTG-CAAAAGTG 548
Query 589 GCCACAATCGCCGGTTACCATTCGACCAACTGG 621
|| || || | |||||| ||| | || ||||
Sbjct 549 GCAACTGTCACTAGTTACCTTTCAAGCAGCTGG 581
> AT3G44400.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16045954-16049668 REVERSE LENGTH=3314
Length=3314
Score = 233 bits (126), Expect = 6e-60
Identities = 466/622 (75%), Gaps = 55/622 (9%)
Strand=Plus/Plus
Query 2267 CATGGATCAAGA-AATTCTCTCGTTTAAC-AGTACTCATACTCAAGGGA-TGCAAAAAGT 2323
||||| |||||| || | |||||||| || || || | |||||| | ||||| || |
Sbjct 2414 CATGGGTCAAGAGAA-TGTCTCGTTT-ACGTGTTCTGACACTCAA-CAACTGCAATAA-T 2469
Query 2324 -TGGTATCACTCCCACAGA-TTCCAGATTCCATCT-CTTACATAGATGCA-AAAGATTGT 2379
||||||||||||| || | ||||||| ||| | | ||||||| ||||| | | |||||
Sbjct 2470 CTGGTATCACTCCCCCA-ACTTCCAGACTCCCT-TGATTACATATATGCAGATA-ATTGT 2526
Query 2380 GAGTCCCTGGAGAGACTAGATTGCTCCTTTCACAATCCAAAGATTTGGCTCAGA-TTTGC 2438
||||||| |||||||| || || | |||| |||||||| ||||| | || | | ||| |
Sbjct 2527 AAGTCCCTCGAGAGACTGGACTGTTGCTTTAACAATCCAGAGATTAGTCT-ATATTTTCC 2585
Query 2439 TAAGTGCTTCAAACTGAATCAAGAAGCCAGAGACCTCATCATCCAGACACCAACTAGTAG 2498
|| ||||||||||||||||||||||||||||| |||||||| || ||| | ||| |||
Sbjct 2586 CAATTGCTTCAAACTGAATCAAGAAGCCAGAGATCTCATCATGCACACATCGACTTCTAG 2645
Query 2499 ATCTGCGGTCTTACCCGGCAGAGAAGTGCCTGCATACTTCACTCACCAATCTACTACTGG 2558
|| |||| | |||||||| | | |||||||||| | ||||| ||||| | ||||| ||||
Sbjct 2646 ATTTGCGATGTTACCCGGTACACAAGTGCCTGCCTGCTTCATTCACCGAGCTACTTCTGG 2705
Query 2559 AGG-TTCCTTGACAATCAAGCTGAACGAGAAGCCTCTTCCTACATCCATGCGGTTTAAGG 2617
|| || ||||| ||||||| |||| ||| |||| |||||||| || || | |||||||
Sbjct 2706 -GGATTACTTGAAAATCAAGTTGAAGGAGTCGCCTTTTCCTACAACCTTGAGATTTAAGG 2764
Query 2618 CTTGCATTTTGCTGGTTCA--TAAAGGT-GACAATGAG----GCTC-GTGAT-GATAAAA 2668
|||| || |||| ||| | | || | || |||||| | || | ||| ||| |
Sbjct 2765 CTTGTATCATGCTTGTTAAGGTTAATGAAGA-AATGAGTTATGATCAGAGATCGATGAGC 2823
Query 2669 ACTGG-ATGG--AT--G---A-A--AATTGCTA-CATTGTT-AGTTGTaaaaaaaG-TAA 2714
|| || | || | | | || |||| || ||| ||| ||| | ||| ||
Sbjct 2824 GTTGACATTGTCATCAGTGTACACCAA--GCTATCAAAGTTCAGT-GTACACCAAGCTAT 2880
Query 2715 GCATTATTTATATCCAGTTTTAGCAGAGCATGTGTACGTATTTGAAGTCGAAGCAGATG- 2773
||| || |||||||||||||| |||||||| | ||| ||||||| | |||| ||| |
Sbjct 2881 -CATCATATATATCCAGTTTTAACAGAGCATATATACACATTTGAACTTGAAGTAGAGGA 2939
Query 2774 --TGACTTCCAGCGG-GCTTGTCTTTGAGTTCAAGATCAGG-AGTAAG-AATTGGAAGAT 2828
||||||||| ||| ||||||||||||||||| |||| || ||| |||||||||||
Sbjct 2940 GGTGACTTCCA-CGGAGCTTGTCTTTGAGTTCAT-ATCATTCAG-AAGCAATTGGAAGAT 2996
Query 2829 AAAAGAATGTGGGGTATTCCAA 2850
| |||||| ||| || |||||
Sbjct 2997 AGGAGAATGCGGGATACTCCAA 3018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142524285063
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5