BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887647

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38545.1 | Symbols:  | other RNA | chr4:18023022-18025287 RE...   165    2e-40
  AT4G38540.1 | Symbols:  | FAD/NAD(P)-binding oxidoreductase fam...  69.4    2e-11


> AT4G38545.1 | Symbols:  | other RNA | chr4:18023022-18025287 
REVERSE LENGTH=1140
Length=1140

 Score =  165 bits (89),  Expect = 2e-40
 Identities = 167/201 (83%), Gaps = 19/201 (9%)
 Strand=Plus/Minus

Query  86   GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGTCTTCAAGGGTATCAAACTAACATT-  144
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | 
Sbjct  723  GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGCCTTGAAGGGTATCAAACTAACACTA  664

Query  145  TTATCAGTATTCATA-AT---C-GACTCTA-TAAACA-GGGAAGTCATCTCTGATCTTGA  197
            |||| | |||||||| ||   | | ||| | |||| | ||| | |||||| |||| ||| 
Sbjct  663  TTATTACTATTCATATATAATCAG-CTC-AGTAAAAAAGGGGACTCATCTTTGATTTTGC  606

Query  198  TGCAGATGGGTGGGTTG-A-CAAATTTCTGCAGAAA-TCCCTTCCAAAGAGATGTTGTTT  254
            ||||||||||||| ||| | ||| ||||||||| || ||| | ||| ||||||| |||||
Sbjct  605  TGCAGATGGGTGG-TTGGAACAA-TTTCTGCAGGAACTCC-TCCCACAGAGATGCTGTTT  549

Query  255  CCAGAATCCG--TATGATTTC  273
            ||||||||||  |||| ||||
Sbjct  548  CCAGAATCCGAGTATG-TTTC  529


> AT4G38540.1 | Symbols:  | FAD/NAD(P)-binding oxidoreductase family 
protein | chr4:18023121-18025027 FORWARD LENGTH=1490
Length=1490

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  86   GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGTCTTCAAGG  128
            |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct  251  GCGTTTCTCAGCATATTCGCAGTCTCCATGATCGCCTTGAAGG  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5