BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887648

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26680.1 | Symbols:  | transcriptional factor B3 family prot...   422    2e-117


> AT1G26680.1 | Symbols:  | transcriptional factor B3 family protein 
| chr1:9219463-9223649 FORWARD LENGTH=3308
Length=3308

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 281/307 (92%), Gaps = 2/307 (1%)
 Strand=Plus/Plus

Query  121  AACATTCCTGTTGCTTTCTTCTCGAAGCATGTTGAAGGAAAAAACGATCAAAACAAGACT  180
            ||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct  171  AACATTCCTGTAGCTTTCTTCTCGAAGCATGTTGAAGGAAGAAACAACCAAAACAAGACT  230

Query  181  GTGAAC-CTGAGATCAGACGCGTCAGAGAAAACTTGGTTAGTGAAGATGGACGGTTTGAA  239
            ||| || || |||||||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct  231  GTG-ACGCTAAGATCAGACGCGTCGGATAAAACTTGGTTAGTGAAGATGGACGGTCTAAA  289

Query  240  TTTAACCGACGGGTGGGAAGATTTTGCCTTTTCACATGATCTCCGAATTGGTGACATTGT  299
              |||||||||| |||||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct  290  ACTAACCGACGGATGGGAAGATTTTGCCTTTGCACATGATCTTCGAACTGGTGACATCGT  349

Query  300  CGTTTTCAGACATGAAGGAGAAATGGTGTTTCATGTCACAGCTTTAGGACCAAGTTGTTG  359
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  350  CGTTTTCAGACTTGAAGGAGAAATGGTGTTTCATGTCACAGCTTTAGGACCAAGCTGTTG  409

Query  360  TGAGATTCAATATTATACATCATCTCATAACATCAATGATGATGATCGTAATGATCAGAC  419
             |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| 
Sbjct  410  CGAGATTCAATATCATACATCATCTCACAATATCAATGATGATGATCGTAATGATCAGAT  469

Query  420  CAATATT  426
            ||| |||
Sbjct  470  CAACATT  476


 Score =  100 bits (54),  Expect = 9e-21
 Identities = 74/83 (89%), Gaps = 4/83 (5%)
 Strand=Plus/Plus

Query  1    ATGGCGGATCAATCTCTTCTACACTCTCCGATCAAACCACATTTCTT-CAAGCCTCTTCT  59
            ||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||
Sbjct  90   ATGGCGGATCAATCTCTTCTACACTCTCCGATCAACCCACATTTCTTTCA-GCCTATTCT  148

Query  60   TGA-AGGCTTTCGCACTCACCTC  81
            | | ||  | |||||||||||||
Sbjct  149  T-ACAGAATCTCGCACTCACCTC  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5