BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887655
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35917.1 | Symbols: CYP79A3P | cytochrome P450, family 79, s... 1485 0.0
AT5G05260.1 | Symbols: CYP79A2 | cytochrome p450 79a2 | chr5:15... 1474 0.0
AT5G35920.1 | Symbols: CYP79A4P | cytochrome P450, family 79, s... 255 6e-67
> AT5G35917.1 | Symbols: CYP79A3P | cytochrome P450, family 79,
subfamily A, polypeptide 3 pseudogene | chr5:14049123-14051128
FORWARD LENGTH=1473
Length=1473
Score = 1485 bits (804), Expect = 0.0
Identities = 978/1063 (92%), Gaps = 8/1063 (1%)
Strand=Plus/Plus
Query 6 CGACTCTACCCCAGTGTTTGTGTTTATTCTAGGTTTGCTTCTCCTTA-CATTAACTATGA 64
|||||||||| || || ||| |||||| |||||||||||||||| || ||||||| ||||
Sbjct 9 CGACTCTACCTCAATGCTTGCGTTTATCCTAGGTTTGCTTCTCC-TATCATTAACAATGA 67
Query 65 AGCGTAAGGAGACGAACAAAACCATGATATTCATTTGCCACACGAGAAACCTCTCTCTCC 124
||||||| |||||||| ||||||||| || | | | |||||||||||||||||||||| |
Sbjct 68 AGCGTAAAGAGACGAAGAAAACCATGTTAATGACTAGCCACACGAGAAACCTCTCTCTTC 127
Query 125 CTCCCGGGCCGAAATCTTGGCCTCTAATAGGAAACCTGCCAGAAATACTAGGGAGGAACA 184
|||| ||||| |||||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 128 CTCCGGGGCCAAAATCTTGGCCTTTAGTTGGAAACCTACCAGAAATACTAGGGAGGAACA 187
Query 185 AGCCGGTGTTCCGGTGGATACATTC-TCTCATGAAAGAACTTAACACCGATATTGCGTGT 243
| ||||||||||||||||||||||| | | ||| ||||||| |||||||||||||| |||
Sbjct 188 AACCGGTGTTCCGGTGGATACATTCAT-TGATGGAAGAACTCAACACCGATATTGCATGT 246
Query 244 ATCTGTCTTGCGAATACTCACGTGATCTCCGTGACATCCCCGAGAATTGCAAGGGAGATT 303
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 ATCCGTCTTGCGAATACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGGGAGATT 306
Query 304 TTGAAGAAGCAAGACTCCGTTTTTGCCACTAGACCGCTAACAATAGGCACGGAGCACTGC 363
|||||||||||||||||||||| |||| ||||||||||||||| || |||||| | |||
Sbjct 307 CTGAAGAAGCAAGACTCCGTTTTCGCCATTAGACCGCTAACAATGGGGACGGAGTATTGC 366
Query 364 AGTCGCGGGTACTTGACCATTGCGGTGGA-TCCACAAGGAGAGCAGTGGAAAAAGATGAG 422
|| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 367 AGCCGCGGGTACTTGACCATTGCGGTGCAGT-CACAAGGAGAGCAGTGGAAAAAGATGAG 425
Query 423 GAGAGTGGTGGCATCTCACGTGACGAGCAAGAAGAGCTTCAAATTGATGCTTGAAAAGAG 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 426 GAGAGTGGTGGCATCTCACGTGACAAGCAAGAAGAGCTTCAAATTGATGCTTGAAAAGAG 485
Query 483 AACCGAAGAGGCTGATAACTTGGTCCGGTACATCAATAACCGCAGTGTCAAAAACTGTGA 542
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 486 AACCGAAGAGGCAGATAACTTAGTCCGGTACATCAATAACCGCTGTGTCAAAAACCGTGG 545
Query 543 TAATGGTAATGGTCTTTCGGTTATTGATTTAAGGCTTGTGTTGCGGCAATACAGCGGAAA 602
|||||||||||||||| |||||||||||||||| ||||| | || ||||||||||| ||
Sbjct 546 TAATGGTAATGGTCTTGCGGTTATTGATTTAAGATTTGTGGTACGACAATACAGCGGGAA 605
Query 603 TGTAGCTCGGAAGATGATGTTTGGTATAAGGCACTTTGGTAAAGGAAGTGAAGATGGATC 662
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 606 TGTAGCTCGGAAGATGATGTTTGGTATACGGCATTTTGGTAAAGGAAGTGAAGATGAATC 665
Query 663 GGGACCAGGGTTCGAAGAGATTGAACATGTTGAATCTTTGTTTACAGTTTTAACCCATCT 722
||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 666 GGGACCAGGGTCCGAAGAGATTGAACATGTCGAATCTTTGTTTACGGTTTTAACCCATCT 725
Query 723 TTACGCCTTTGCATTGTCGGATTATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCA 782
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 726 TTACGCCTTTGCATTGTCGGATTATGTCCCGTGGTTAAGGTTCTTGGACTTGGAAGGCCA 785
Query 783 AGAGAAGATTGTGATTGACGCAATGAGAAATGTAAGCAAGTATAACGATCCTATTGTCGA 842
|||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 786 TGAGAAGGTTGTGGCTGACGCAATGAGAAATGTAAGTAAGTATAACGATCCTTTTGTCGA 845
Query 843 TGAAAGACTCATGCAATGGCGAAATGGAAATATGAAAAAGCCTCAAGATTTTCTTGACAT 902
||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||
Sbjct 846 TGAAAGACTCATGCAATGGCGAAATGGGAAGATGAAAGAGCCTCAAGATTTTCTCGACAT 905
Query 903 GTTTATAATGGCGAAAGACACTGACGGGAAA-CCTACTCTGTCGGACGAAGAGATCAAAG 961
||||||||||||||||||||| |||| ||| |||||||| ||||| |||||||||||||
Sbjct 906 GTTTATAATGGCGAAAGACACCAACGG-AAAGCCTACTCTATCGGAAGAAGAGATCAAAG 964
Query 962 CACAAGTGAAGGAACTAATGTTGGCGACGGTGGATAATCCGTCTAATGCGGCGGAATGGG 1021
||||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 965 CACAAGTGACGGAACTAATGTTGGCTACAGTAGATAATCCGTCTAATGCGGCGGAGTGGG 1024
Query 1022 CCATGGCGGAGATGATTAATGAGCCGAGCATCATGCAAAAAGC 1064
| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1025 CTATGGCGGAGATGATTAACGAGCCGAGCATCATGCAAAAAGC 1067
Score = 392 bits (212), Expect = 4e-108
Identities = 260/283 (92%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 1072 GTGAAAGAGGCATTCCGGTTACATCCCGTGGCGCCGTTCAACCTCCCTCACATGTCCACT 1131
||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1109 GTG-AAGAGACATTTCGGTTACATCCGGTGGCGCCATTCAACCTCCCTCACATGTCCACT 1167
Query 1132 GCCT-ACGCTGTGGTAGACGGTTACTTCATCCCCAAGGGAAGCCACATGCTAATTAGTCG 1190
| || | |||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1168 G-CTGATGCTGTGGTGGATGGTTACTTCATCCCCAAGGGAAGCCACATGCTTATTAGTCG 1226
Query 1191 TATGGGGATCGGGAGAAACCCTAGCGTGTGGGACAAGCCGCTTAAGTTCGACCCTGAGAG 1250
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1227 TATGGGGATCGGGAGAAACCCTAATGTGTGGGACAAGCCGCTTAAATTTAACCCTGAGAG 1286
Query 1251 ACATTTGGGCAATAACAAAACCATGACGTACATGTTGCTGGCTCGGTTGATTCAAGGGTT 1310
|||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 ACATTTAGGCAATAACTCATCCATGACGTACATGTTGCTGGCTCGGTTGATTCAAGGGTT 1346
Query 1311 CACGTGGTCACCAGTGCCCGGTGAAAGTAAAATTGATCTTTCA 1353
||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 1347 CACATGGTCACCAGTGCCTGGTGAAAGTAAAATTGATATTTCA 1389
> AT5G05260.1 | Symbols: CYP79A2 | cytochrome p450 79a2 | chr5:1559778-1561765
REVERSE LENGTH=1572
Length=1572
Score = 1474 bits (798), Expect = 0.0
Identities = 964/1043 (92%), Gaps = 15/1043 (1%)
Strand=Plus/Plus
Query 27 GTTTATTCTAGGTTTGCTTCTCCTTACATTAACTATGAAGCGTAAGGAGACGAACAAAAC 86
||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||| |||||
Sbjct 9 GTTTATTATAGGTTTGCTTCTTCTTGCATTAACTATGAAGCGTAAGGAGAAGAAGAAAAC 68
Query 87 CATGATATTCATTTGCCAC-ACGAGAAACCTCTCTCTCCCTCCCGGGCCGAAATCTTGGC 145
|||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CATG---TTAATTAGCC-CTACGAGAAACCTCTCTCTCCCTCCCGGGCCGAAATCTTGGC 124
Query 146 CTCTAATAGGAAACCTGCCAGAAATACTAGGGAGGAACAAGCCGGTGTTCCGGTGGATAC 205
|| |||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 125 CTTTAATCGGAAACCTACCGGAAATACTAGGGAGGAACAAACCGGTGTTCCGGTGGATAC 184
Query 206 ATTCTCTCATGAAAGAACTTAACACCGATATTGCGTGTATCTGTCTTGCGAATACTCACG 265
||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 185 ATTCTCTCATGAAAGAACTCAACACCGATATTGCATGTATCCGTCTTGCGAATACTCACG 244
Query 266 TGATCTCCGTGACATCCCCGAGAATTGCAAGGGAGATTTTGAAGAAGCAAGACTCCGTTT 325
||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 245 TGATCCCCGTGACATCCCCGAGAATTGCAAGAGAGATTCTGAAGAAGCAAGACTCCGTTT 304
Query 326 TTGCCACTAGACCGCTAACAATAGGCACGGAGCACTGCAGTCGCGGGTACTTGACCATTG 385
| ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||| |||
Sbjct 305 TCGCCACTAGACCGCTAACGATGGGCACGGAGTACTGCAGCCGCGGGTACTTGACCGTTG 364
Query 386 CGGTGGATCCACAAGGAGAGCAGTGGAAAAAGATGAGGAGAGTGGTGGCATCTCACGTGA 445
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 CGGTGGAGCCACAAGGAGAGCAGTGGAAGAAGATGAGGAGAGTGGTGGCATCTCACGTGA 424
Query 446 CGAGCAAGAAGAGCTT-CAAATTGATGCTTGAAAAGAGAACCGAAGAGGCTGATAACTTG 504
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 425 CGAGCAAGAAGAGCTTCCAAA-TGATGCTACAAAAGAGAACCGAAGAGGCTGATAACTTA 483
Query 505 GTCCGGTACATCAATAACCGCAGTGTCAAAAACTGTGATAATGGTAATGGTCTTTCGGTT 564
|||||||||||||||||||| |||||||||||| ||| ||||| | | | | | ||||
Sbjct 484 GTCCGGTACATCAATAACCGTAGTGTCAAAAACCGTGGTAATGCT--T--T-TGT-GGTT 537
Query 565 ATTGATTTAAGGCTTGTGTTGCGGCAATACAGCGGAAATGTAGCTCGGAAGATGATGTTT 624
|||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||
Sbjct 538 ATTGATTTAAGGCTTGCGGTACGGCAATACAGTGGAAATGTAGCTCGGAAGATGATGTTT 597
Query 625 GGTATAAGGCACTTTGGTAAAGGAAGTGAAGATGGATCGGGACCAGGGTTCGAAGAGATT 684
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GGTATAAGGCATTTTGGTAAAGGAAGTGAAGATGGATCGGGACCAGGGTTGGAAGAGATT 657
Query 685 GAACATGTTGAATCTTTGTTTACAGTTTTAACCCATCTTTACGCCTTTGCATTGTCGGAT 744
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 658 GAACATGTGGAATCTTTGTTTACGGTTTTAACCCATCTTTACGCCTTTGCATTGTCAGAT 717
Query 745 TATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCAAGAGAAGATTGTGATTGACGCA 804
|||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||
Sbjct 718 TATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCATGAGAAGGTTGTGAGTAACGCA 777
Query 805 ATGAGAAATGTAAGCAAGTATAACGATCCTATTGTCGATGAAAGACTCATGCAATGGCGA 864
|||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 778 ATGAGAAATGTAAGTAAGTATAACGACCCTTTTGTTGATGAAAGACTCATGCAATGGCGA 837
Query 865 AATGGAAATATGAAA-AAGCCTCAAGATTTTCTTGACATGTTTATAATGGCGAAAGACAC 923
||||| || |||||| || ||||||||||||||||||||||||||||| || ||||||||
Sbjct 838 AATGGGAAGATGAAAGAA-CCTCAAGATTTTCTTGACATGTTTATAATAGCTAAAGACAC 896
Query 924 TGACGGGAAACCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGAAGGAACTAATGTT 983
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 897 TGACGGGAAGCCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGACGGAACTAATGTT 956
Query 984 GGCGACGGTGGATAATCCGTCTAATGCGGCGGAATGGGCCATGGCGGAGATGATTAATGA 1043
||||||||| |||||||||||||| ||||| || |||| ||||||||||||||||| ||
Sbjct 957 GGCGACGGTTGATAATCCGTCTAACGCGGCAGAGTGGGGTATGGCGGAGATGATTAACGA 1016
Query 1044 GCCGAGCATCATGCAAAAAGCCG 1066
|||||||||||||||||||||||
Sbjct 1017 GCCGAGCATCATGCAAAAAGCCG 1039
> AT5G35920.1 | Symbols: CYP79A4P | cytochrome P450, family 79,
subfamily A, polypeptide 4 pseudogene | chr5:14056437-14056904
FORWARD LENGTH=468
Length=468
Score = 255 bits (138), Expect = 6e-67
Identities = 177/196 (90%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 1073 TGAAAGAGGCATTCCGGTTACATCCCGTGGCGCCGTTCAACCTCCCTCACATGTCCACTG 1132
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 20 TGAAAGAGGCATTCCGGTTACATCATGTGGCGCCATTCAACCTCCCTCACATGTCCACT- 78
Query 1133 CCT-ACGCTGTGGTAGACGGTTACTTCATCCCCAAGGGAAGCCACATGCTAATTAGTCGT 1191
|| | | |||||| || |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 79 ACTGATGTTGTGGTGGATGGTTACTTCATCCCCAAGGGAAGCCACAAGCTTATTAGTCGT 138
Query 1192 ATGGGGATCGGGAGAAACCCTAGCGTGTGGGACAAGCCGCTTAAGTTCGACCCTGAGAGA 1251
|||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct 139 ATGGGGATCGGGAGAAACCCTAAAGTGTGGGACAAACCGCTTAAGTTTGATCCTGAGAGA 198
Query 1252 CATTTGGGCAATAACA 1267
||||| |||||||||
Sbjct 199 CATTTAAGCAATAACA 214
Score = 134 bits (72), Expect = 3e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1271 CCATGACGTACATGTTGCTGGCTCGGTTGATTCAAGGGTTCACGTGGTCACCAGTGCCCG 1330
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 CCATGACGTACATGTTGGTGGCTCGGTTGATTCAAGGGTTCACGTGGTCACCAGTACCCA 361
Query 1331 GTGAAAGTAAAATTGATCTTTCATTAA 1357
||||||||||||||||| ||||| |||
Sbjct 362 GTGAAAGTAAAATTGATATTTCAGTAA 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5